1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgggtctactcttgcgtcactctcggttcaaactgaattacttacttgaaaaaaaaaatgaaattctatttttgcaagacactagtcttatggctctaggggcatgcatgcagtacttggacaatccatttccagaagcttgctttcttcttaaatttcacctgttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACAACTCTAACCTGGACCTAAGCGCTGCTGATCTCATCAACAGAATATCTT
species | Zea mays |
transcript | GRMZM2G176612_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|60340103|gb|DN207076.1|DN207076
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: AGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGAATCTTTTTGGCCGCAATGATGCGGACEST: gi|67020510|gb|CO449259.1|CO449259
genomic: AGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CANAACAGAGAAGAAGAA-GAAAGCTCA-CTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCCGATCTTTNTGGCCGCAATGGATGCG-AEST: gi|60397852|gb|DN230668.1|DN230668
genomic: CAAAACAGAGAAGA-GAAAGAA-GCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATG-ATGCGGA
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|110942246|gb|EE162403.1|EE162403
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGGG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|60355075|gb|DN222048.1|DN222048
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
gacaatccatttccagaagcttgctttcttcttaaatttcacctgttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACAACTCTAACCTGGACCTAAGCGCTGCTGATCTCATCAACAGAATATCTT
tttcttcttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtctactcttgcgtcactctcggttcaaactgaattacttacttgaaaaaaaaaatgaaattctatttttgcaagacactagtcttatggctctaggggcatgcatgcagtacttggacaatccatttccagaagcttgctttcttcttaaatttcacctgttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACAACTCTAACCTGGACCTAAGCGCTGCTGATCTCATCAACAGAATATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT