1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...caccccaaaccctagacgggtagtctaacatctttaaatccaattttgatcgtcacatgcatgtgcaataaaatgtcacttctatactttgtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGACGAGTGAGACTTATGAGTTCAGGTGCTTCTCCACT
species | Zea mays |
transcript | GRMZM2G176546_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAG GGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGEST: gi|211216803|gb|FL024788.1|FL024788
genomic: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAGgtaagaacag ... gtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAG
EST: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAG GGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGEST: gi|211216806|gb|FL024791.1|FL024791
genomic: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAGgtaagaacag ... gtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAG
EST: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAG GGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGEST: gi|211216802|gb|FL024787.1|FL024787
genomic: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAGgtaagaacag ... gtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAG
EST: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAG GGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGEST: gi|91873018|gb|EB402975.1|EB402975
genomic: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAGgtaagaacag ... gtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAG
EST: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAG GGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGEST: gi|32839199|gb|CD978880.1|CD978880
genomic: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAGgtaagaacag ... gtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAG
EST: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAG GGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGEST: gi|50335868|gb|CO530994.1|CO530994
genomic: AAAATTGTTTCATACTGCATACAATGCCAAGAGACAAGCAATCCTTAAAGgtaagaacag ... gtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAG
EST: GAGACAAGCAATCCTTAAAG GGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAG
genomic: GAGACAAGCAATCCTTAAAGgtaagaacag ... gtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAG
ttgatcgtcacatgcatgtgcaataaaatgtcacttctatactttgtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGACGAGTGAGACTTATGAGTTCAGGTGCTTCTCCACT
ttttgat putative branch site (score: 33)
aataaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccccaaaccctagacgggtagtctaacatctttaaatccaattttgatcgtcacatgcatgtgcaataaaatgtcacttctatactttgtgttatcagGGAAAAATCCATCCCCAGTGTGGGATAAGTTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGACGAGTGAGACTTATGAGTTCAGGTGCTTCTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa