1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttggtgccctgccattgtgctgctgcttaaatgagcatatggatattgagcttatgattttccaaaataacttgtgtttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGATTACAACGGAAGAGGACCTCCACCAGGAACAGGCCGTTGTTTTAACTGTGGAGTTGATGGTCACTGGGCAA
species | Zea mays |
transcript | GRMZM2G175419_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGG GTTCCTCGTGGTTCTGGTGGTTCANGTGATTACAACGGAAGAGGAEST: gi|31360494|gb|CD444851.1|CD444851
genomic: ATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGGgtaagttggt ... gtgtttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGATTACAACGGAAGAGGA
EST: GCCGCATTATTGTTGAATTTGCTAAAGGG GTTCCTCGTGGTTCTGGTGGTTCACGTGATTAC-ACGGAAGAGGACCTCCAEST: gi|61118470|gb|DN559431.1|DN559431
genomic: GCCGCATTATTGTTGAATTTGCTAAAGGGgtaagttggt ... gtgtttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGATTACAACGGAAGAGGACCTCCA
EST: ATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGG GTTCCTCGTGGTTCTGGTGGTTCACGTGATTACAACGGAAGAGGACCTCCA
genomic: ATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGGgtaagttggt ... gtgtttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGATTACAACGGAAGAGGACCTCCA
aaatgagcatatggatattgagcttatgattttccaaaataacttgtgtttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGATTACAACGGAAGAGGACCTCCACCAGGAACAGGCCGTTGTTTTAACTGTGGAGTTGATGGTCACTGGGCAA
aaataac putative branch site (score: 79)
attttccaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggtgccctgccattgtgctgctgcttaaatgagcatatggatattgagcttatgattttccaaaataacttgtgtttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGATTACAACGGAAGAGGACCTCCACCAGGAACAGGCCGTTGTTTTAACTGTGGAGTTGATGGTCACTGGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG