1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtttattgttaacactatcagctacattccacagctatatgacacacttaagcactatattctagtgtatatcattgaatgctttcattaaagaagttgcttgctaaatatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG
species | Zea mays |
transcript | GRMZM2G175419_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCEST: gi|101391570|gb|EB817721.1|EB817721
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTC
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|78109291|gb|DV527707.1|DV527707
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|15208745|gb|BI430629.1|BI430629
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|31360494|gb|CD444851.1|CD444851
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|113808432|gb|DW929109.1|DW929109
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: GAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|31360368|gb|CD444725.1|CD444725
genomic: GAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: AATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|21809627|gb|BQ667945.1|BQ667945
genomic: AATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGEST: gi|76290330|gb|DV029898.1|DV029898
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACG
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|61118470|gb|DN559431.1|DN559431
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|67025176|gb|CO453925.1|CO453925
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGEST: gi|94473189|gb|EB702147.1|EB702147
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
EST: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAG GCGTGAGAGAAGCTATTCACGGTCTCCATCCCTACGCCGAGGACGGGGCCG
genomic: GAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtttattg ... atatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCG
tagtgtatatcattgaatgctttcattaaagaagttgcttgctaaatatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG
tgctaaa putative branch site (score: 796)
taaatatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttattgttaacactatcagctacattccacagctatatgacacacttaagcactatattctagtgtatatcattgaatgctttcattaaagaagttgcttgctaaatatgtttagGCGTGAGAGAAGCTATTCACGGTCTCCATCCCCACGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT