1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taccacatgttttgatgtttgcacttacgtcactgaaatactttgggtttgctagatatgtgctgaagttgaataatgttgttctgtggcaaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTCAAACGTAGCTTATGTAGCGAAAGAACTTTATGACATGGGCTGCTATGAG
species | Zea mays |
transcript | GRMZM2G175071_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGACGTTGCTCTTGCTGGGAAAGAG-AAGAAATTCCTGTCCGAGG GTACGTTTCTTGTGT-GTTGGATGCCCAGTAGATGGACCAGTGCCACCTTCEST: gi|60394740|gb|DN227610.1|DN227610
genomic: AATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGGgtgagctctt ... aaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTC
EST: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGG GTATGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTCEST: gi|86467648|gb|DY234018.1|DY234018
genomic: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGGgtgagctctt ... aaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTC
EST: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGG GTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTCEST: gi|211148321|gb|FL359569.1|FL359569
genomic: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGGgtgagctctt ... aaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTC
EST: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGG GTATGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGTCACCTTCEST: gi|60356988|gb|DN223961.1|DN223961
genomic: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGGgtgagctctt ... aaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTC
EST: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGG GTATGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTCEST: gi|76293871|gb|DV033439.1|DV033439
genomic: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGGgtgagctctt ... aaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTC
EST: TATAATGACGTTGCTCTTGCTGGGAAAGAGAAAGAAATTCCTGTCCGAGG GTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTCEST: gi|60401129|gb|DN233936.1|DN233936
genomic: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGGgtgagctctt ... aaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTC
EST: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGG GTATGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGTCACCTTC
genomic: TATAATGACGTTGCTCTTGCTGCGAAAGAGAAAGAAATTCCTGTCCGAGGgtgagctctt ... aaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTC
ggtttgctagatatgtgctgaagttgaataatgttgttctgtggcaaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTCAAACGTAGCTTATGTAGCGAAAGAACTTTATGACATGGGCTGCTATGAG
ttgaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccacatgttttgatgtttgcacttacgtcactgaaatactttgggtttgctagatatgtgctgaagttgaataatgttgttctgtggcaaaaatgtagGTACGTTTCTTGTGTGGTTGGATGCCCAGTAGATGGACCAGTGCCACCTTCAAACGTAGCTTATGTAGCGAAAGAACTTTATGACATGGGCTGCTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -tgttttg
- - - - - - - -tgtttgc
- - - - - - - - - - - - - - - cactgaa
- - - - - - - - - - - - - - - - - - - - - - - -tttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa