Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgcactatattatagctaagtattgttctttacatataaagccacattgctaagagttaatactttgttctttacttcttggtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAG

Basic information

species Zea mays
transcript GRMZM2G174990_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174990_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g46720.2 (Oryza sativa), 3'ss of exon 4
gtatgctgcactatattatagctaagtattgttctttacatataaagccacattgctaagagttaatactttgttctttacttcttggtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAG
||||| || | |     ||| | || | ||  |||| |||   |    ||||| | || || |   |  ||   | | || |   ||  | ||||||||||| ||||||||||| ||| |||| || ||  ||||||||||| | ||||||||||||| ||| ||||||||||||
gtatg-tgtatt----cataaccaaatgtttctcttaacactgag---cacatagttatgactctgtgattgact-tgtattatatga-atatcaagGGTTTAAAGAACTTCTCAAAAGCTGCAAGGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353713|gb|CD438070.1|CD438070
EST:     CTAAATAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAG
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAG
EST: gi|211483110|gb|FK977837.1|FK977837
EST:     TAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGGCGTG                         GGTTTCAAGAACTT
genomic: TAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGG-CGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTT
EST: gi|71426247|gb|DR807297.1|DR807297
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAAATTA-TCACACGAT
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAA-TTAATCACACGAT
EST: gi|211480220|gb|FK977825.1|FK977825
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCAC
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCAC
EST: gi|60351666|gb|DN218639.1|DN218639
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAG
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAG
EST: gi|101386148|gb|EB815117.1|EB815117
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTTCA-GAACTTCTCGAAATCTGC
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTT-CAAGAACTTCTCGAAATCTGC
EST: gi|211480224|gb|FK977829.1|FK977829
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGNGCAAGGCGNG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGA
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagccacattgctaagagttaatactttgttctttacttcttggtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAG
                  agttaat  putative branch site (score: 4)
                    ttaatacttt  TA-rich tract