1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttggatatggcttgcattttttttgggggtaatacatgagtatatctgactagaccaagatctatggggggtacattagagttaatatagaattagatgcttgtacccatgtcatggcatacatagaattttatgtacagttagaatcttgaatttatgcctcttcttgtttcagGAGCCCTGTCCCCCACCAGCCGTTCCATTTCATTTCCAGGGAGTTCATCACGTACTCCACTATTAGATGACAGTGGGTGCGCAACCAGGAGAAGGAAACA
species | Zea mays |
transcript | GRMZM2G174971_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATCTATGGGCCAAGACC GAGCCCTGTCCCCCACCAGCCGTTCCATTTCATTTCCAGGGAGTTCATCACEST: gi|60340600|gb|DN207573.1|DN207573
genomic: GATCTATGGGCCAAGACCgtaagttgga ... cttgtttcagGAGCCCTGTCCCCCACCAGCCGTTCCATTTCATTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTATGGGCCAAGACC GAGCCCTGTCCCCCACCAGCCGTTCCATTTCATTTCCAGGGAGTTCATCAC
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTATGGGCCAAGACCgtaagttgga ... cttgtttcagGAGCCCTGTCCCCCACCAGCCGTTCCATTTCATTTCCAGGGAGTTCATCAC
acatagaattttatgtacagttagaatcttgaatttatgcctcttcttgtttcagGAGCCCTGTCCCCCACCAGCCGTTCCATTTCATTTCCAGGGAGTTCATCACGTACTCCACTATTAGATGACAGTGGGTGCGCAACCAGGAGAAGGAAACA
tgcctcttcttgtttc CT-rich tract
aatcttgaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggatatggcttgcattttttttgggggtaatacatgagtatatctgactagaccaagatctatggggggtacattagagttaatatagaattagatgcttgtacccatgtcatggcatacatagaattttatgtacagttagaatcttgaatttatgcctcttcttgtttcagGAGCCCTGTCCCCCACCAGCCGTTCCATTTCATTTCCAGGGAGTTCATCACGTACTCCACTATTAGATGACAGTGGGTGCGCAACCAGGAGAAGGAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA