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gtatggagtcttctttttccttatatatgttgtttggatgtatgaactccgcactgagtggtaccatgttattatcaaataatcttatggcttcacttaacatattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCCCATCACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATT
species | Zea mays |
transcript | GRMZM2G174830_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGTAGTGTTTTGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGGATTCTGCGCCTCCTAAAGTTTGEST: gi|160481567|gb|EY254399.1|EY254399
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGG-ATTCTGCGCCTCCTAAAGTTTG
EST: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCEST: gi|71433192|gb|DR814242.1|DR814242
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
EST: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCEST: gi|78114801|gb|DV533189.1|DV533189
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
EST: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCEST: gi|74242321|gb|DT650235.1|DT650235
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
EST: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
gtggtaccatgttattatcaaataatcttatggcttcacttaacatattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCCCATCACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATT
acttaac putative branch site (score: 53)
atgttattatcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggagtcttctttttccttatatatgttgtttggatgtatgaactccgcactgagtggtaccatgttattatcaaataatcttatggcttcacttaacatattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCCCATCACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG