Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATGGTGAACCAGAAGGCGCTTTTTCCTGGCGACTC

Basic information

species Zea mays
transcript GRMZM2G174596_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174596_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g03060.1 (Oryza sativa), 3'ss of exon 3
-------------------------------------------------------------------------------------------------------------------------------------cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATGGTGAACCAGAAGGCGCTTTTTCCTGGCGACTC
                                                                                                                                     ||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||                                  
gcaggcataagtatcaacgaggtcttcttgtgatatacaccttttgcccctccatgtttacatcatttcatctttaacataacccactttggtttgttagGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAA----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71437488|gb|DR818538.1|DR818538
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|71437488|gb|DR818538.1|DR818538
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|6166635|gb|AW144899.1|AW144899
EST:     GTGGTGACGCTTTGGTATAGAGCGCCCGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|6166635|gb|AW144899.1|AW144899
EST:     GTGGTGACGCTTTGGTATAGAGCGCCCGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|6195050|gb|AW147154.1|AW147154
EST:     GTGGTGACGCTTTGGTATAGAGCGCCCGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|6195050|gb|AW147154.1|AW147154
EST:     GTGGTGACGCTTTGGTATAGAGCGCCCGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|71444926|gb|DR825976.1|DR825976
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|71444926|gb|DR825976.1|DR825976
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|94479504|gb|EB708462.1|EB708462
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCC                         TTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGT
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAAT-Cc ... cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATG
EST: gi|93013282|gb|EB638802.1|EB638802
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|93013282|gb|EB638802.1|EB638802
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|71429407|gb|DR810457.1|DR810457
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|71429407|gb|DR810457.1|DR810457
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|71450242|gb|DR831292.1|DR831292
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCC                         TTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGT
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAAT-Cc ... cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATG
EST: gi|76281310|gb|DV020878.1|DV020878
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|76281310|gb|DV020878.1|DV020878
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|78089052|gb|DV517443.1|DV517443
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGANATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|78089052|gb|DV517443.1|DV517443
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGANATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|74240718|gb|DT648632.1|DT648632
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|74240718|gb|DT648632.1|DT648632
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|78116062|gb|DV534450.1|DV534450
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|78116062|gb|DV534450.1|DV534450
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|31356323|gb|CD440680.1|CD440680
EST:     GTGGTGACGCTTTGGTATAGAGCGCCCGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|31356323|gb|CD440680.1|CD440680
EST:     GTGGTGACGCTTTGGTATAGAGCGCCCGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|93011828|gb|EB637348.1|EB637348
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCC                         TTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGT
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAAT-Cc ... cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATG
EST: gi|149049768|gb|EE048452.2|EE048452
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         TTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTT
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATGG
EST: gi|29130881|gb|CB381585.1|CB381585
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCC                         TTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGT
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAAT-Cc ... cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATG
EST: gi|76017785|gb|DT944955.1|DT944955
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|76017785|gb|DT944955.1|DT944955
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|93015279|gb|EB640799.1|EB640799
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCC                         TTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGT
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAAT-Cc ... cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATG
EST: gi|78079585|gb|DV507997.1|DV507997
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|78079585|gb|DV507997.1|DV507997
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|91879043|gb|EB409000.1|EB409000
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|91879043|gb|EB409000.1|EB409000
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|71313906|gb|DR793551.1|DR793551
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGANATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|71313906|gb|DR793551.1|DR793551
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGANATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|50329879|gb|CO525005.1|CO525005
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCC                         TTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGT
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAAT-Cc ... cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATG
EST: gi|76932908|gb|DV173231.1|DV173231
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGANATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA
EST: gi|76932908|gb|DV173231.1|DV173231
EST:     GTGGTGACGCTTTGGTATAGAGCGCCTGANATC                         C
genomic: GTGGTGACGCTTTGGTATAGAGCGCCTGAAATCc ... c-c ... cTTCTCGGTGCA