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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttcgatctttctcactaagcaaatttgcttccaatagtactgctttaagtgttcgccctgctatcattgatcctctttcttaaacattttctgttgttcattttgtttcgatagtttaaattttccttttcggatatgacggtcttttccttttcgccttcagGTTGTAGACCGTATGCATACTTCCATATGCTGGAAGAACTTCAAGCGGCAAATTCAAACAACGCACAAAACCAACAGTCCACAGGTGATCATCGCATTGG

Basic information

species Zea mays
transcript GRMZM2G174343_T07
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174343_T07 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g04660.1 (Oryza sativa), 3'ss of exon 8
gttgttcgatctttctcactaagcaaatttgcttccaatagtactgctttaagtgttcgccctgctatcattgatcctctttcttaaacattttctgttgttcattttgtttcgatagtttaaattttccttttcggatatgacggtcttttccttttcgccttcagGTTGTAGACCGTATGCATACTTCCATATGCTGGAAGAACTTCAAGCGGCAAATTCAAACAACGCACAAAACCAACAGTCCACAGGTGATCATCGCATTGG
                                                     | |||  | | ||       || |  |  |  |   ||     |||  ||  ||  ||  |  | ||| ||| |||||||| | |  || |  ||| |||||||||  ||| ||||||  ||||||||||||||||||||||||| || || ||||||| ||| || ||  |||| ||| ||| ||| |||||     |||  ||||   ||| 
---------------------------------------------------gtttttcagctttcttaagcaaattcgttcaccaaggaatg----gtttctctcttccttaagcaaatttgaatattcctttttgaaagtggc--tctcttccttttcatcttaagGTTGGGGACCGTATGCATACTTCCATATGCTTGAGGAGCTTCAAGTGGCCAACTCCCACAATGCAGAAAGCCAGCAGTCAGTGTGTGGGCATCATGTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71326098|gb|DR799728.1|DR799728
EST:     GGCAGTGCTATGTTACCTGCATTTCTTTCCTCCTCCATACCATGATCAAG                         GTTGTAGACCGTATGCATACTTCCATATGCTGGAAGAACTTCAAGCGGCAA
genomic: GGCAGTGCTATGTTACCTGCATTTCTTTCCTCCTCCATACCATGATCAAGgttgttcgat ... tcgccttcagGTTGTAGACCGTATGCATACTTCCATATGCTGGAAGAACTTCAAGCGGCAA
EST: gi|76917794|gb|DV167005.1|DV167005
EST:     GGCAGTGCTATGTTACCTGCATTTCTTTCCTCCTCCATACCATGATCAAG                         GTTGTAGACCGTATGCATACTTCCCTATGCTGGAAGAACTTCAAGCGGCAA
genomic: GGCAGTGCTATGTTACCTGCATTTCTTTCCTCCTCCATACCATGATCAAGgttgttcgat ... tcgccttcagGTTGTAGACCGTATGCATACTTCCATATGCTGGAAGAACTTCAAGCGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatagtttaaattttccttttcggatatgacggtcttttccttttcgccttcagGTTGTAGACCGTATGCATACTTCCATATGCTGGAAGAACTTCAAGCGGCAAATTCAAACAACGCACAAAACCAACAGTCCACAGGTGATCATCGCATTGG
                               cggtcttttccttttc  CT-rich tract
      tttaaattttcctttt  TA-rich tract