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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcctaaatatgacatgaaatcccattctcacaactatccaatctctcgcctgatttaatcctggtgtttttttactattgtatgaaacattagACGTCCTTGGTATTATTACGGAAATCTCTGCGATTAAGCCTGTCGGAAATGCACACATACCCTCATCTTACAATCGACATGTTCTGATAAAAAACCTCAG

Basic information

species Zea mays
transcript GRMZM2G174114_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60341388|gb|DN208361.1|DN208361
EST:     AAGCTATGACAAGATTGATCCAGATGGATCAAATGCAAGAAACTTCCATG                         ACGTCCTTGGTATTATTACGGAAATCTCTGCGATTAAGCCTGTCGGAAATG
genomic: AAGCTATGACAAGATTGATCCAGATGGATCAAATGCAAGAAACTTCCATGgtatgtttcc ... gaaacattagACGTCCTTGGTATTATTACGGAAATCTCTGCGATTAAGCCTGTCGGAAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatctctcgcctgatttaatcctggtgtttttttactattgtatgaaacattagACGTCCTTGGTATTATTACGGAAATCTCTGCGATTAAGCCTGTCGGAAATGCACACATACCCTCATCTTACAATCGACATGTTCTGATAAAAAACCTCAG
              atttaat  putative branch site (score: 4)
                            tttttttactattgta  TA-rich tract