1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccaaatttacaaagttatttggttgaaaaattagatgattatattcaacagtggaccatttgatgtgtggaatgctgagattgtctgattttcacattagGTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAGAAGATCATCGAAGAGCAGCAGCGCTTAACAGGTGTGAAATCTGAAACTC
species | Zea mays |
transcript | GRMZM2G173943_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAA GTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAGEST: gi|32802653|gb|CD954889.1|CD954889
genomic: TGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAAgtaagtcttt ... ttcacattagGTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAG
EST: CCCTCAAACTGCAGATGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAA GTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAGEST: gi|32788006|gb|CD940242.1|CD940242
genomic: CCCTCAAACTGCAGATGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAAgtaagtcttt ... ttcacattagGTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAG
EST: CCCTCAAACTGCAGATGGAGGTCCAAAAGCGGCTGCACGAACAGGTAGAA GTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGGACCTCCAGEST: gi|211498957|gb|FL033695.1|FL033695
genomic: CCCTCAAACTGCAGATGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAAgtaagtcttt ... ttcacattagGTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAG
EST: CCCTCAAACTGCAGATGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAA GTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAGEST: gi|32805015|gb|CD957251.1|CD957251
genomic: CCCTCAAACTGCAGATGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAAgtaagtcttt ... ttcacattagGTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAG
EST: CCCTCAAACTGCAGATGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAA GTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAG
genomic: CCCTCAAACTGCAGATGGAGGTCCAAAAGCGGCTGCACGAACAGTTAGAAgtaagtcttt ... ttcacattagGTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAG
caacagtggaccatttgatgtgtggaatgctgagattgtctgattttcacattagGTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAGAAGATCATCGAAGAGCAGCAGCGCTTAACAGGTGTGAAATCTGAAACTC
gtctgat putative branch site (score: 4)
ttttcac CT-rich tract
atttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaatttacaaagttatttggttgaaaaattagatgattatattcaacagtggaccatttgatgtgtggaatgctgagattgtctgattttcacattagGTACAAAGGCAGCTGCAGTTACGAATTGAGGCTCAGGGAAAGTACCTCCAGAAGATCATCGAAGAGCAGCAGCGCTTAACAGGTGTGAAATCTGAAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG