1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cgaaaacacagataatggagcattgcattgccaggatgcatggtttttagtagtaaagtaatggtagtaatactggaatggaatgttctctatgtgtcagGCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG
species | Zea mays |
transcript | GRMZM2G173682_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATG GCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACEST: gi|148949197|gb|EC894635.2|EC894635
genomic: GGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATGgtaaacctgc ... tatgtgtcagGCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCAC
EST: GGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATG GCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACEST: gi|211435917|gb|FL467684.1|FL467684
genomic: GGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATGgtaaacctgc ... tatgtgtcagGCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCAC
EST: GGGCTCTCTACCTAGATCCCCATGACGTTCAGATG GCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACEST: gi|84969916|gb|DV170881.2|DV170881
genomic: GGGCTCTCTACCTAGATCCCCATGACGTTCAGATGgtaaacctgc ... tatgtgtcagGCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCAC
EST: GGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATG GCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACEST: gi|211435918|gb|FL467685.1|FL467685
genomic: GGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATGgtaaacctgc ... tatgtgtcagGCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCAC
EST: GGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATG GCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCAC
genomic: GGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATGgtaaacctgc ... tatgtgtcagGCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCAC
tttagtagtaaagtaatggtagtaatactggaatggaatgttctctatgtgtcagGCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG
tgttctct CT-rich tract
taaagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaaaacacagataatggagcattgcattgccaggatgcatggtttttagtagtaaagtaatggtagtaatactggaatggaatgttctctatgtgtcagGCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- -aaacaca
- - - - - - - -tggagca
- - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - tgcatgg