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...tgagtttatggtaaagctgaagtttaacaagcttatttaatgtaacgctcttgcttttccacttgtaaattgagggaaaaaacttccatcgttactgcagTTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAGAG
species | Zea mays |
transcript | GRMZM2G173424_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATT TTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAGEST: gi|211119821|gb|FL462978.1|FL462978
genomic: TGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctccc ... gttactgcagTTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAG
EST: CTTGATGAGAAAATTGATT TTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAGEST: gi|211209489|gb|FL043657.1|FL043657
genomic: CTTGATGAGAAAATTGATTgtgagctccc ... gttactgcagTTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAG
EST: TGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATT TTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAGEST: gi|74244689|gb|DT652603.1|DT652603
genomic: TGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctccc ... gttactgcagTTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAG
EST: TGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATT TTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAGEST: gi|71307467|gb|DR789938.1|DR789938
genomic: TGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctccc ... gttactgcagTTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAG
EST: TGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATT TTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAG
genomic: TGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctccc ... gttactgcagTTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAG
cgctcttgcttttccacttgtaaattgagggaaaaaacttccatcgttactgcagTTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAGAG
ttgtaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtttatggtaaagctgaagtttaacaagcttatttaatgtaacgctcttgcttttccacttgtaaattgagggaaaaaacttccatcgttactgcagTTTCATTCCGGCTGTATGATCTCAAGCAGCAAGGCTATATTGAGAGACAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - -gctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa