1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attttaggttagtttttaggaagaaaaaaaagcacgctccttttctttattgtttgttgaattctgtagataccataacaaaccctcctactgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGACGTTCGCCGCGTTTGCTGGGCTAATAGGTCTCATGGTGGGGCTCCTGA
species | Zea mays |
transcript | GRMZM2G171406_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTG GATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGEST: gi|16919153|gb|BM074062.1|BM074062
genomic: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTGgtacagtata ... ctgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
EST: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTG GATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGEST: gi|60397188|gb|DN230004.1|DN230004
genomic: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTGgtacagtata ... ctgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
EST: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTG GATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGEST: gi|91048694|gb|EB159112.1|EB159112
genomic: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTGgtacagtata ... ctgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
EST: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTG GATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGEST: gi|94475040|gb|EB703998.1|EB703998
genomic: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTGgtacagtata ... ctgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
EST: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTG GATGTGTTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGEST: gi|78024373|gb|DV492760.1|DV492760
genomic: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTGgtacagtata ... ctgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
EST: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTG GATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGEST: gi|5069938|gb|AI737903.1|AI737903
genomic: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTGgtacagtata ... ctgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
EST: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTG GATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGEST: gi|5069940|gb|AI737905.1|AI737905
genomic: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTGgtacagtata ... ctgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
EST: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTG GATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
genomic: AAGAAAGAGACAACATGCTTCAGCAAAATCAGCAAATGCAACGTGAATTGgtacagtata ... ctgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTG
tttattgtttgttgaattctgtagataccataacaaaccctcctactgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGACGTTCGCCGCGTTTGCTGGGCTAATAGGTCTCATGGTGGGGCTCCTGA
ccataac putative branch site (score: 3)
ccctcctact putative PPT
ataacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttaggttagtttttaggaagaaaaaaaagcacgctccttttctttattgtttgttgaattctgtagataccataacaaaccctcctactgtgttcagGATGTGCTTCGGAGGCGCAGGAGCCGCAAAGGCGATGCAGGTTTCTCCCTGACGTTCGCCGCGTTTGCTGGGCTAATAGGTCTCATGGTGGGGCTCCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG