Sequence
atgc intronic sequence ATGC exonic sequencegtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaatgaaatctcctgatgtaacggccggccagTGTTCTCTCTATCTTGCAGATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171390_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 6
---------------gtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaatgaaatctcctgatgtaacggccggccagTGTTCTCTCTATCTT--GCAGATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACG-------------------
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gtaaaaggagatcatgtcatgctgcagcaaccatactatgtggaactgtcctgtgcatttcaa-gatttttactggactgaaaagtaatggaattgttcttgatcatcaacagATAGTGATGGAGCTACCAGTGGAGCATGGACTTCTTCTGGACAATCTATTAGATCTTGCTCATGCTCCTTTTACTCATACATCCACCTTTGCCAAGGGTT
upper sequence: GRMZM2G171390_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 3'ss of exon 6
----------gtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaat--gaaatctcctgatgtaacggccggccagTG----TTCTCTCTATCTT--GCAGATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACG-------------------
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gtaaaacgaaatcatgtcatactgcagcaatcttccatggtgaaagtgtcctgtgtttttcaagttttttttactggactgtaaagtaatggaatttatcttcatcatcaacagATGGTGATGGAGCTACCGGTGGAGCATGGACTTCTGCTGGACAATCTATTAGATATTGCTCATGCTCCTTTTGCTCATACGTCCACCTTTGCCAAGGGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71445817|gb|DR826867.1|DR826867EST: CCTTCTCTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAG TGTTCTCTCTATCTTGCAGATAGTGATGGAGCTACCAGTTGAACATGGACT
genomic: CCTTCTCTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAGgtaaaattaa ... ggccggccagTGTTCTCTCTATCTTGCAGATAGTGATGGAGCTACCAGTTGAACATGGACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctacaatgcaatgcaatgcaatgcaatgaaatctcctgatgtaacggccggccagTGTTCTCTCTATCTTGCAGATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACG
atgtaac putative branch site (score: 3)
aatgaaat TA-rich tract