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gtatgttactgaggatttaatctttcatgatgcttttctttgtgcaacttgacagttgatgagtgctactttcatacctatgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAGAAAATTGACAATGATAACTACCCAGAG
species | Zea mays |
transcript | GRMZM2G171354_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAGGCATC-TTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTG GGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAGEST: gi|32933167|gb|CF037979.1|CF037979
genomic: AAAGGCA-CATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTGgtatgttact ... tgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAG
EST: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTG GGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCGGCGACTGCAGEST: gi|211297306|gb|FK975033.1|FK975033
genomic: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTGgtatgttact ... tgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAG
EST: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTG GGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAGEST: gi|13178166|gb|BG349424.1|BG349424
genomic: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTGgtatgttact ... tgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAG
EST: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTG GGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAGEST: gi|6564181|gb|AW231803.1|AW231803
genomic: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTGgtatgttact ... tgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAG
EST: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTG GGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAGEST: gi|211297305|gb|FK975032.1|FK975032
genomic: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTGgtatgttact ... tgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAG
EST: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTG GGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAG
genomic: CAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTGgtatgttact ... tgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAG
ttctttgtgcaacttgacagttgatgagtgctactttcatacctatgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAGAAAATTGACAATGATAACTACCCAGAG
tttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttactgaggatttaatctttcatgatgcttttctttgtgcaacttgacagttgatgagtgctactttcatacctatgtttcatagGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTCAGCGACTGCAGAAAATTGACAATGATAACTACCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG