1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatgacatactcttggagctgttcatctagagagcttttgctatatgtggtctgctttgcctgcccagctgattgaatcatgttgatatcactccttcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAATGAGACGAAGGCTACAGTCAAGTTTCAACTGAAGAAAGTCCTTTGCAT
species | Zea mays |
transcript | GRMZM2G170561_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCATCAAGCAAATTCCCCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAEST: gi|211282654|gb|FL066061.1|FL066061
genomic: CATCATCAAGCAAATTCCCCGTCTCCATGGTCCTGGTCTCAACAAGGCAGgcaagtagtc ... actccttcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGA
EST: CATCATCAAGCAAATTCCCCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAEST: gi|211284455|gb|FL066066.1|FL066066
genomic: CATCATCAAGCAAATTCCCCGTCTCCATGGTCCTGGTCTCAACAAGGCAGgcaagtagtc ... actccttcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGA
EST: CATCATCAAGCAAATTCCCCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGA
genomic: CATCATCAAGCAAATTCCCCGTCTCCATGGTCCTGGTCTCAACAAGGCAGgcaagtagtc ... actccttcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGA
tgtggtctgctttgcctgcccagctgattgaatcatgttgatatcactccttcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAATGAGACGAAGGCTACAGTCAAGTTTCAACTGAAGAAAGTCCTTTGCAT
tgttgat putative branch site (score: 72)
tcactccttc CT-rich tract
attgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgacatactcttggagctgttcatctagagagcttttgctatatgtggtctgctttgcctgcccagctgattgaatcatgttgatatcactccttcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAATGAGACGAAGGCTACAGTCAAGTTTCAACTGAAGAAAGTCCTTTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA