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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgcatgtcttgtagttttatacatttgtctccttaatgcaccatcatgtgaagtttcaaattagtataatgaagtctctttatattctgcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAACATATTATTCCA

Basic information

species Zea mays
transcript GRMZM2G170291_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G170291_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g18200.1 (Oryza sativa), 3'ss of exon 5
--tgtgc---atgtcttgtagtt--ttatacatttgtctccttaatgcaccatcatgtgaagtttcaaattagtataatgaagtctctttatattctgcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAACATATTATTCCA
  ||| |    || | |   |    ||| | | | |    | || || | ||  || |||   ||    ||  |  ||| || ||||||   || || | | ||||||| ||||||||||||||||||||||   ||||||| ||||| || ||||| ||||| | |||
attgtaccagctggcatactgcctgttacaaaatagaagtcctattggatcactat-tgagcctt----ttgatgcaattaaatctctt-gcatcctactc-tgcagGATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAATATATTGTCCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91873536|gb|EB403493.1|EB403493
EST:     CAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: CAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|76021195|gb|DT948365.1|DT948365
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|91872354|gb|EB402311.1|EB402311
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|76016190|gb|DT943360.1|DT943360
EST:     ATTTCTTTAGCAGCGCTAAGCTGAAGGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|50332549|gb|CO527675.1|CO527675
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|76014034|gb|DT941204.1|DT941204
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|76010860|gb|DT938030.1|DT938030
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|211321948|gb|FK966254.1|FK966254
EST:     ATTTC-TTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|74236587|gb|DT644501.1|DT644501
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|78105399|gb|DV523817.1|DV523817
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|60351954|gb|DN218927.1|DN218927
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|18661354|gb|BM501369.1|BM501369
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|60356095|gb|DN223068.1|DN223068
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|211321950|gb|FK966256.1|FK966256
EST:     ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: ATTTCTTTAGCAGCGCTAAGCTGAATGGATACACCCCACCCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
EST: gi|71771441|gb|DR969378.1|DR969378
EST:     CCAATAAAGAG                         GACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC
genomic: CCAATAAAGAGgtaatatttg ... gcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgtgaagtttcaaattagtataatgaagtctctttatattctgcacatgcagGACTGTGGACAGCCAGGATTCACCCCAGCAGAGAGACGGCGTTTTGGCAACATATTATTCCA
          tttcaaattagtataa  TA-rich tract