1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taaagtagatctctatgtgcgaatgcattttttccttcactgcaaatgtatcttacttttgttgcatcttacttttgcttctccgtggttacacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATCCTGATACAAGTGGGCATTTGCAGAGGTTAAAAGTGATGGATCCAATTGA
species | Zea mays |
transcript | GRMZM2G170148_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG CTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATCEST: gi|76292940|gb|DV032508.1|DV032508
genomic: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATGgtgagcactc ... acacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATC
EST: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG CTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATCEST: gi|88752636|gb|DY536777.1|DY536777
genomic: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATGgtgagcactc ... acacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATC
EST: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG CTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATCEST: gi|60345246|gb|DN212219.1|DN212219
genomic: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATGgtgagcactc ... acacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATC
EST: CATCACTCCATG CTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATAATTTGATEST: gi|60358291|gb|DN225264.1|DN225264
genomic: CATCACTCCATGgtgagcactc ... acacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCAT-ATTTGAT
EST: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG CTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATCEST: gi|60399046|gb|DN231862.1|DN231862
genomic: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATGgtgagcactc ... acacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATC
EST: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG CTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATCEST: gi|149001408|gb|EE038705.2|EE038705
genomic: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATGgtgagcactc ... acacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATC
EST: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG CTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATC
genomic: GCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATGgtgagcactc ... acacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATC
atgtatcttacttttgttgcatcttacttttgcttctccgtggttacacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATCCTGATACAAGTGGGCATTTGCAGAGGTTAAAAGTGATGGATCCAATTGA
atcttac putative branch site (score: 68)
ttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaagtagatctctatgtgcgaatgcattttttccttcactgcaaatgtatcttacttttgttgcatcttacttttgcttctccgtggttacacacacagCTATGCCAGATTTTGCCCGAGTATACAGCTTCCTAGGAAGCATATTTGATCCTGATACAAGTGGGCATTTGCAGAGGTTAAAAGTGATGGATCCAATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - -tatgtgc
- - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca