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gtaagtgtcatacctgcccataccagtacttttgcagctatttattattttaatctataatgcaatagtattggtgttcacaaagattcattcttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGTAAGGGCTGCTATTCTGCAAACCGAG
species | Zea mays |
transcript | GRMZM2G169927_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTCGATATTTT GAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGTEST: gi|71447266|gb|DR828316.1|DR828316
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTTgtaagtgtca ... cttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGT
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTT GAGCACTCTGCCATCAATAAACTCATTAACAAGGTGGTTTGGAGAGGCTGTEST: gi|71772935|gb|DR970858.1|DR970858
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTTgtaagtgtca ... cttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGT
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTT GAGCACTCTGCCATCAATAACCTCATTAGCAAGGTGGTT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTTgtaagtgtca ... cttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTT
ttttaatctataatgcaatagtattggtgttcacaaagattcattcttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGTAAGGGCTGCTATTCTGCAAACCGAG
ttttaat putative branch site (score: 3)
ttcattcttctatc putative PPT
atctataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtcatacctgcccataccagtacttttgcagctatttattattttaatctataatgcaatagtattggtgttcacaaagattcattcttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGTAAGGGCTGCTATTCTGCAAACCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT