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...ctagcagccattagagatgtgagacgagatctggaaaccattgtgcattggtttagcattgctctacgaagttccttattgtgcaaagtttgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGATTAAATCAGAAG
species | Zea mays |
transcript | GRMZM2G169773_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGG GATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGAEST: gi|211370168|gb|FL333601.1|FL333601
genomic: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcg ... tgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGA
EST: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGG GATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGAEST: gi|71449251|gb|DR830301.1|DR830301
genomic: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcg ... tgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGA
EST: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGG GATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGAEST: gi|78077114|gb|DV505548.1|DV505548
genomic: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcg ... tgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGA
EST: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGG GATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGAEST: gi|78115059|gb|DV533447.1|DV533447
genomic: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcg ... tgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGA
EST: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGG GATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGAEST: gi|211012583|gb|FL327130.1|FL327130
genomic: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcg ... tgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGA
EST: ACCAATTCACCTGYWAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGG GAATTGACAGCTTGEST: gi|71429331|gb|DR810381.1|DR810381
genomic: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcg ... tgttatgcagGA-TTGACAGCTTG
EST: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGG GATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGAEST: gi|211146797|gb|FL347631.1|FL347631
genomic: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcg ... tgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGA
EST: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGG GATTGACAGCTTGCCTCTTTTGGA-CATCATTGCAACTACAGCAGCATGGA
genomic: ACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcg ... tgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGA
cattggtttagcattgctctacgaagttccttattgtgcaaagtttgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGATTAAATCAGAAG
tttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagcagccattagagatgtgagacgagatctggaaaccattgtgcattggtttagcattgctctacgaagttccttattgtgcaaagtttgttatgcagGATTGACAGCTTGCCTCTTTTGGAACATCATTGCAACTACAGCAGCATGGATTAAATCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA