Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttcagaaatataaattcataagtttggttcatatttacaatatacttctagagcatgtgatttttatctgaaaagttcagagtagtgtgtttttctttgttaagtcctttattctctgcctgtctatgtgtttatatatcaacgtactagtttgttttgcgctgacaaccacaaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG

Basic information

species Zea mays
transcript GRMZM2G169694_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 3'ss of exon 5
gtatgcttcagaaa-tataaatt-----cataagtttggt-tcatatttacaatatacttctagagc--atgtgatttttatctgaaaagttcagagtagtgtgtttttctttgttaagtcctttattctctgcctgtctatgtgtttatatatcaacgtactagtttgttttgcgctgacaaccacaaacttg-tgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG
|| |||||  |||| ||||||||     ||||   || || | | ||    |   ||   |  | |   || ||     | |    |||||||| | | ||||  |||| ||||  |  | ||  | |||     | | |||| ||| | ||    |     || ||||||     ||||||        | || ||| |||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |||  |||| |
gtgtgcttaggaaaatataaatttcttgcatatcctttgtattacatcaggagattagcacgcgtgtagatctggcacattttcagaaagttcaaaatcgtgttcttttatttgggagatgctgaaatctgaat-tatttatgggtt-acatgggga-----taatttgtt-----ctgacattttttctcatgctgatcagGCGTTGTTCCGTAAGATTGCGGCTGCACTTCCTGGAATGGAGACCCTCTCATCAGCAAAGCAGGAAGACATGGTTGATGTGAACTTGAAGTCAAGCAACG

upper sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 5
gtatgcttcagaaatataaattcataagtttggttcatatttacaatatacttctagagcatgtgatttttatctgaaaagttcagagtagtgtgtttttctttgttaagtcctttattctctgcctgtctatgtgtt-tatatatcaacgtactagtttgttttgcgctgacaaccacaaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG
                                                                                                | |  || ||  |      |    ||    | | |   | |  ||| | ||    | |||  ||    ||   |        | ||| | ||  ||||| || || || ||||||||||| ||||| ||||||||||| || || || || || ||||| ||||||||||||||||| ||||| | |||    ||||
--------------------------------------------------------------------------------------------tccctctctttcgtggaagtaactgagatccttatatatggttctaatatttctcttgcttctaacttaccatgtattt-tgttatccaacatttgtacagGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATG

upper sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 5
gtatgcttcagaaatataaattcataagtttggttcatatttacaatatacttctagagcatgtgatttttatctgaaaagttcagagtagtgtgtttttctttgttaagtcctttattctctgcctgtctatgtgtttatatatcaacgtactagtttgttttgcgctgacaaccacaaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG
                                                                                        |       | ||   ||  |    ||    ||  |   ||  | |     ||| | ||    | |||  ||    ||   |           || | ||  ||||| || || || ||||||||||| ||| | ||||||||||| || || || || || ||||| ||||||||||||||||| ||||| | |||    | ||
----------------------------------------------------------------------------------------tccccctctctttcgtggaagaaactgagatccttatatggttctaa---tatttttcttgcttctaacttaccatgtattc-tgttattcgacatctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAACTG

upper sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 5
lower sequence: PP1S2_143V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatgcttcagaaatataaattcataagtttggttcatatttacaatatacttctagagcatgtgatttttatctgaaaagttcagagtagtgtgtttttctttgttaagtcctttattctctgcctgtctatgtgtttatatatcaacgtactagtttgttttgcgctgacaaccacaaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG----
                                                                                        |||| ||| | |||   |  | |     |     |    |   ||   |||| ||| || || | ||  |  | ||    |     ||  | ||    | |||||| |||||||| ||||| ||||||||| | |||||||||||| |  | || ||    ||   ||| ||  | |||||||| |   | | | ||  ||  |    
---------------------------------------------------------------------------------------ctagtttgtctctctcgat--acttgaaaaagagattaaagctgattaattta-ataccatcgaa-tatctcatgtttatttctttgcctaatacc-acgtgcagGCACTGTTCCGAAAAATCGCTGCTGCATTGCCTGGAATGGAGGCTTTGTCTTCTCACAA---GGATGATCTCGTTGATGTCAGTCTTAAG-CCAACATCGAATC

upper sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 5
lower sequence: PP1S346_29V6.1 (Physcomitrella patens), 3'ss of exon 6
gtatgcttcagaaatataaattcataagtttggttcatatttacaatatacttctagagcatgtgatttttatctgaaaagttcagagt-agtgtgtttttctttgttaa-gtcctttattctctgcctgtctatgtgtttatatatcaacgt-actagtttgttttg-cgctgacaaccacaaacttgtgag----cagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG----
||||| |      || ||   |  | | |  |     ||| |       |  | ||    ||       | || | |    |   |||| || ||  ||   |  ||    || ||  ||  || | || |||  ||| | |   ||  |  |  || | |   | |   | ||   | ||     ||||       ||||| |||||||| ||||||||||||||  | |||||||||||| |    | |||  |  |  |||| ||  | ||||| || ||  | | | ||  |||      
gtatgatcagtggatctagtctggttactcagaacagtatgtttctgggagctttaagatatcgaggaatcat-taacttctggtgagtgagcgtagttgcatacgtagttgtgctcaatagtcagtctttcttagtgatcaacgatagatattgcttgctcaatgtaatgttgctgaacagttcattgtattattccagGCACTGTTCCGAAAAATTGCTGCTGCGTTGCCTGGAATGGAGGC---TTTATCGTCTCACAAGGATGATCTCGTTGACGTCAATCTTAAG-CCAACAACTAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149104596|gb|EE290046.2|EE290046
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|71333156|gb|DR803613.1|DR803613
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|87156850|gb|DY401639.1|DY401639
EST:     GCTGGGTTT-ACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: GCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|6194588|gb|AW146692.1|AW146692
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGNTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|93283341|gb|EB675605.1|EB675605
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCT
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|148970042|gb|EE020962.2|EE020962
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTNAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|213172892|gb|FM183005.1|FM183005
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|33093555|gb|CF053549.1|CF053549
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|91048667|gb|EB159085.1|EB159085
EST:     TGGGAGTCATGTTTATTGAAACCAGTGGTAAGGGTGGGTTTAACATTAAG                         GGGGTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|37397830|gb|CF636223.1|CF636223
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|33092315|gb|CF052309.1|CF052309
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|149085277|gb|EE174782.2|EE174782
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|211210611|gb|FL436840.1|FL436840
EST:     TCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|71333158|gb|DR803614.1|DR803614
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|56462112|gb|CK986410.1|CK986410
EST:     TTGGAGTCATGTTTATTGAGACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCCGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|16918486|gb|BM073769.1|BM073769
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|211355171|gb|FL139763.1|FL139763
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|6865292|gb|AW360642.1|AW360642
EST:     GGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: GGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|213167949|gb|FM194944.1|FM194944
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|26559742|gb|CA831977.1|CA831977
EST:     GCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: GCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|32919615|gb|CF024427.1|CF024427
EST:     AGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: AGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|148954186|gb|EC899590.2|EC899590
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCT
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|166699528|gb|EG206326.1|EG206326
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGGACTTCCTGGAATGGAGACG
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACG
EST: gi|148960910|gb|EE011595.2|EE011595
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|213169870|gb|FM180689.1|FM180689
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|213169997|gb|FM189153.1|FM189153
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|32870836|gb|CF010518.1|CF010518
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
EST: gi|149085276|gb|EE174781.2|EE174781
EST:     TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAG                         GCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA
genomic: TTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 205

GCAAGTCTCAATAGAGGAAGGGGAGGGCAAGGCGAAGGACCTTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 267

GCAAGTCTCAATAGAGGAAGGGGAGGGCAAGGCGAAGGACCTTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 261

GCAAGTCTCAATAGAGGAAGGGGAGGGCAAGGCGAAGGACCTTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 309

GCAAGTCTCAATAGAGGAAGGGGAGGGCAAGGCGAAGGACCTTGGAGTCATGTTTATTGAAACCAGTGCTAAGGCTGGGTTTAACATTAAGgtatgcttca ... ttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatatcaacgtactagtttgttttgcgctgacaaccacaaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG
                            cgctgac  putative branch site (score: 309)
                   tttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcttcagaaatataaattcataagtttggttcatatttacaatatacttctagagcatgtgatttttatctgaaaagttcagagtagtgtgtttttctttgttaagtcctttattctctgcctgtctatgtgtttatatatcaacgtactagtttgttttgcgctgacaaccacaaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA