1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actactctgtcagagtagcctgtaggctttcaaatctcactaattggtgtcatggcagtgaaatatttcttgttatagcactcacctattgatttctcagACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAG
species | Zea mays |
transcript | GRMZM2G169462_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAG ACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGEST: gi|211393676|gb|FK980040.1|FK980040
genomic: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAGgtaccaatat ... gatttctcagACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGG
EST: TGAT-CACGCCTCAGGGATTTGATGAA-ATGAAGATTTTCGCTGATACAG ACGCTGACGTAEST: gi|71439100|gb|DR820150.1|DR820150
genomic: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAGgtaccaatat ... gatttctcagACGCTGACGTA
EST: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAC ACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGEST: gi|148987214|gb|EE031046.2|EE031046
genomic: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAGgtaccaatat ... gatttctcagACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGG
EST: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAG ACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGEST: gi|5847365|gb|AW000444.1|AW000444
genomic: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAGgtaccaatat ... gatttctcagACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGG
EST: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAG ACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGEST: gi|211396289|gb|FK980046.1|FK980046
genomic: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAGgtaccaatat ... gatttctcagACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGG
EST: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAG ACGCTGACGTACGGTTAACAAGGAGGEST: gi|211396288|gb|FK980045.1|FK980045
genomic: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAGgtaccaatat ... gatttctcagACGCTGACGTACGGTTAACAAGGAGG
EST: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAG ACGCTGACGTACGGTTAACAAGGAGGATC
genomic: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAGgtaccaatat ... gatttctcagACGCTGACGTACGGTTAACAAGGAGGATC
ggtgtcatggcagtgaaatatttcttgttatagcactcacctattgatttctcagACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAG
tttctc CT-rich tract
aaatatttcttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actactctgtcagagtagcctgtaggctttcaaatctcactaattggtgtcatggcagtgaaatatttcttgttatagcactcacctattgatttctcagACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG