1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agatttgtgccgtagaagttccttgtatgcttaactctttggcatttgcattggagatgtatttgacaaatgcacatctaatttctatttgtatttgcagGTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCCAGGGAAATCAGATTCAG
species | Zea mays |
transcript | GRMZM2G168913_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAGTTCTG GTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCCEST: gi|76287277|gb|DV026845.1|DV026845
genomic: AGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAGTTCTGgtatgtagat ... gtatttgcagGTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCC
EST: AGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAGTTCTG GTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCCEST: gi|60291869|gb|DN190108.1|DN190108
genomic: AGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAGTTCTGgtatgtagat ... gtatttgcagGTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCC
EST: AGAAGTGCTTCCTTTATGAGACGGTGCACAAAATTTTGGTGATAGTTCTG GTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCCEST: gi|148965419|gb|EE016220.2|EE016220
genomic: AGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAGTTCTGgtatgtagat ... gtatttgcagGTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCC
EST: AGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAGTTCTG GTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCC
genomic: AGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAGTTCTGgtatgtagat ... gtatttgcagGTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCC
ttgcattggagatgtatttgacaaatgcacatctaatttctatttgtatttgcagGTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCCAGGGAAATCAGATTCAG
atctaat putative branch site (score: 52)
atctaatttctatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatttgtgccgtagaagttccttgtatgcttaactctttggcatttgcattggagatgtatttgacaaatgcacatctaatttctatttgtatttgcagGTAGTTATCCCAAAAATATGTCAACATTTGCACCTAATAGTGTCAACAGCCAGGGAAATCAGATTCAG
- - -tgtgccg
- - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - - - - -ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcac