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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaaccttttttaaacttttgcacatactattttcatctgacccccatctagattatgaataccacttgaatgtgttactgacatgctgctttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGATGTAGAGAACATCCTTGTTGAAATGGGAACATACTTTCAAGTCCAG

Basic information

species Zea mays
transcript GRMZM2G168681_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168681_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g46580.1 (Oryza sativa), 3'ss of exon 7
gtaattaaccttttttaaacttttgcacatactattttcatctgacccccatctagattatgaataccacttgaatgtgttactgacatgctgctttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGATGTAGAGAACATCCTTGTTGAAATGGGAACATACTTTCAAGTCCAG
     |||  ||| |    | ||  || || ||   || ||   | ||   | | | | || ||||| | |||   ||| |||||| |||||| | ||||||||||||| ||||| ||| |||| ||||| ||| | |||  ||| ||||||| ||||||  |||| |||||| | ||||||| ||||||||||||||| 
----gtaaaatttatattccattgccatat-cttcgtttatgcaatccttgttttgttaataaatactaattgcgagtggtactgatatgctgttatatcaaagGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAA

upper sequence: GRMZM2G168681_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA09G01820.3 (Glycine max), 3'ss of exon 7
gtaattaaccttttttaaacttttgcacatactatttt-catctgacccccatctagattatgaataccacttgaatgtgttactgacatg-ctgctttat-caaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGATGTAGAGAACATCCTTGTTGAAATGGGAACATACTTTCAAGTCCAG
     |   |||     || || |     |  ||||||  || |||  |   |  |  |  |   |  |||| ||||    | |  | ||  |||||   | || |||||||||||||  ||||  |  | || ||| || | |||||  ||| ||||||| ||||||| |||||||| |||||||||||||||||||| |||
-----ttctcttaaaagaagttatttcttttttattttgtatttgattcgttttcaagtcttt--tcacactggaattatcttcatatatatctgctccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG

upper sequence: GRMZM2G168681_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA15G12780.1 (Glycine max), 3'ss of exon 7
gtaattaaccttttttaaacttttgcacatactattttcatctgaccc-ccat-ctagattatgaataccacttgaatgtgttactg-acatgctgctttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGATGTAGAGAACATCCTTGTTGAAATGGGAACATACTTTCAAGTCCAG
      |    ||||| |  || |         |||||||   | |    ||  || || ||| | || |  ||   | | ||  |    ||       |  || |||||||||||||  ||||  |  | || ||| || | |||||  ||| ||||||| ||||||| |||||||| |||||||||||||||||||| |||
------atttcttttttattttatatttgattcattttcaatagtcttatcacactggaatat-actatctgttatttatcttcatatgtatctcctccttacacagGTTGCATGTGCATTGCTCATGGCGGGTGAGGATCTTGACAACCATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24768804|gb|CA403933.1|CA403933
EST:     TCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: TCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|60349036|gb|DN216009.1|DN216009
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|60355476|gb|DN222449.1|DN222449
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|74235733|gb|DT643647.1|DT643647
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|67011082|gb|CO439831.1|CO439831
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|31356120|gb|CD440477.1|CD440477
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|31349560|gb|CD433917.1|CD433917
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|32851875|gb|CD991556.1|CD991556
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|31356964|gb|CD441321.1|CD441321
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|31353974|gb|CD438331.1|CD438331
EST:     AGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGCTCAATTATGGTGAT
genomic: AGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|60345209|gb|DN212182.1|DN212182
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|24768472|gb|CA403601.1|CA403601
EST:     TATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: TATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|31356532|gb|CD440889.1|CD440889
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|24769591|gb|CA404720.1|CA404720
EST:     CTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: CTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|149005405|gb|EE039957.2|EE039957
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|6102050|gb|AW126520.1|AW126520
EST:     CGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTNTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: CGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|5124143|gb|AI745767.1|AI745767
EST:     TTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGCCAATTATGGTGAT
genomic: TTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|19351797|gb|BM896329.1|BM896329
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATG
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATG
EST: gi|19351126|gb|BM895658.1|BM895658
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATG
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATG
EST: gi|211405627|gb|FL391567.1|FL391567
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|31356011|gb|CD440368.1|CD440368
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|9254158|gb|BE344626.1|BE344626
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GCTGCATGTGCCCTGCTGCTCTCTGGCGAGA
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGA
EST: gi|9254637|gb|BE345105.1|BE345105
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACATTTTTGTTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|4753535|gb|AI657445.1|AI657445
EST:     ATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
EST: gi|71323848|gb|DR798601.1|DR798601
EST:     ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCG                         GTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT
genomic: ACGGTCGAATTGTTCAATACAAGACAGCCTATTATTCATTTTATCTGCCGgtaattaacc ... tttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctagattatgaataccacttgaatgtgttactgacatgctgctttatcaaagGTTGCATGTGCCCTGCTGCTCTCTGGCGAGAATTTGGACAATTATGGTGATGTAGAGAACATCCTTGTTGAAATGGGAACATACTTTCAAGTCCAG
                               tactgac  putative branch site (score: 1)
                                         ctgcttt  putative PPT
       attatgaata  TA-rich tract