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gtacttctgctttgtggcataatgataaataaatctgtcctactcaactgtagcttgcacatagccctcgggattcaggaactgtaattcatgtattctttttaaaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTCACTATTTAACAGAACATTTTTCAGGTGGTACTAAAATTGGAAAGCAAG
species | Zea mays |
transcript | GRMZM2G168249_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTEST: gi|60348765|gb|DN215738.1|DN215738
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
EST: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTEST: gi|211040609|gb|FL332006.1|FL332006
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
EST: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTEST: gi|60344624|gb|DN211597.1|DN211597
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
EST: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTEST: gi|31354612|gb|CD438969.1|CD438969
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
EST: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
catagccctcgggattcaggaactgtaattcatgtattctttttaaaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTCACTATTTAACAGAACATTTTTCAGGTGGTACTAAAATTGGAAAGCAAG
taattcatgtattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttctgctttgtggcataatgataaataaatctgtcctactcaactgtagcttgcacatagccctcgggattcaggaactgtaattcatgtattctttttaaaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTCACTATTTAACAGAACATTTTTCAGGTGGTACTAAAATTGGAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG