1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgttttaatctcttgagtgtttcccctgtgggctgtactccttggggttctaatatcatcagttcttgaaaatggaacagaattattttgatactggttacatttgatatacatggatgtattctttgtttaataggaattgcaattgagtttcaagtggatttgctcacatgcagGAGAGAGCTTCAGCAGAAGCAGAAAATAGATCATTGCCTCCGTCACACACTAGCAATGATGTCCGTGCATTAAGAACAAGTGATTTCATACATGCGCATG
species | Zea mays |
transcript | GRMZM2G168228_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTACTGCTGCACACCGTCCTATTAGGGAGATTCTTGAAAAGGAAAAGAAG GAGAGAGCTTCAGCAGAAGCNGAAAATAGATCATTGCCTCCGTCACACACTEST: gi|211424427|gb|FK972464.1|FK972464
genomic: TTACTGCTGCACACCGTCCTATTAGGGAGATTCTTGAAAAGGAAAAGAAGgtttgtttta ... tcacatgcagGAGAGAGCTTCAGCAGAAGCAGAAAATAGATCATTGCCTCCGTCACACACT
EST: TTACTGCTGCACACCGTCCTATTAGGGAGATTCTTGAAAAGGAAAAGAAG GAGAGAGCTTCAGCAGAAGCAGAAAATAGATCATTGCCTCCGTCACACACT
genomic: TTACTGCTGCACACCGTCCTATTAGGGAGATTCTTGAAAAGGAAAAGAAGgtttgtttta ... tcacatgcagGAGAGAGCTTCAGCAGAAGCAGAAAATAGATCATTGCCTCCGTCACACACT
ttctttgtttaataggaattgcaattgagtttcaagtggatttgctcacatgcagGAGAGAGCTTCAGCAGAAGCAGAAAATAGATCATTGCCTCCGTCACACACTAGCAATGATGTCCGTGCATTAAGAACAAGTGATTTCATACATGCGCATG
tgctcac putative branch site (score: 2)
tttgctc CT-rich tract
tgtttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttaatctcttgagtgtttcccctgtgggctgtactccttggggttctaatatcatcagttcttgaaaatggaacagaattattttgatactggttacatttgatatacatggatgtattctttgtttaataggaattgcaattgagtttcaagtggatttgctcacatgcagGAGAGAGCTTCAGCAGAAGCAGAAAATAGATCATTGCCTCCGTCACACACTAGCAATGATGTCCGTGCATTAAGAACAAGTGATTTCATACATGCGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC