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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatctatctcccatttttcagaatgaatttttatttggattaggttcattttttttgtgcaatgcaaagttcatgtcttagcaccatttgaattttagaaaccaacttattttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG

Basic information

species Zea mays
transcript GRMZM2G168176_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168176_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g37870.1 (Oryza sativa), 3'ss of exon 5
gtgatctatctcccatttttcagaatgaatttttatttggattaggttcattttttttgtgcaatgcaaagttcatgtcttagcaccatttgaattttagaaaccaacttattttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG
|| || |||    |  |||      | |||||| |||   | |           ||    |||||   ||||||      |||||   | ||||| |||       |   | |||| ||||||||||||||||||||||||||||| || ||||||||||| ||| |||| || ||||||||| |||||
gtaatatattagtctgtttgttttcttaattttcatt--aact---cctgccagttacaagcaata-gaagttc-----ctagcattgtctgaatattaccgtatgatcaactttgtcagATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101388447|gb|EB816210.1|EB816210
EST:     TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAG                         ATTTCTGTTCCCCCACA-TGAGATTTGATAAAGT-GATAAAGGTGGTATGG
genomic: TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCC-ACAATGAGATT-GATAAAGTTGATAAAGGTGGTATGG
EST: gi|148943696|gb|EC888763.2|EC888763
EST:     TATTTGTCTTCTCCATTGTGGATGGGCATGTTTGGTTTCGAAACTACCAG                         ATTTCTGTTTCCCCACA-TGAGATTGATAAAGTTGATAAAGGTGGTATGGA
genomic: TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTT-CCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGA
EST: gi|71325419|gb|DR799392.1|DR799392
EST:     TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAG                         ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGG
genomic: TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGG
EST: gi|76289777|gb|DV029345.1|DV029345
EST:     TCCATTGGGGATGGCCATGTTTGGTTTGGAAACTACCAG                         ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
genomic: TCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
EST: gi|60336677|gb|DN203650.1|DN203650
EST:     TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAG                         ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
genomic: TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
EST: gi|76283913|gb|DV023481.1|DV023481
EST:     TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAG                         ATTTCTGTTTCCCACAATGAGATGGATAAAGTTGATAAAGGTGGTATGGAA
genomic: TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
EST: gi|78180563|gb|DV550891.1|DV550891
EST:     TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAG                         ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
genomic: TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
EST: gi|89249178|gb|DY620964.1|DY620964
EST:     GAAACTACCAG                         ATTTTTGTTCCCCCCAATGAGATTGATAAAGGTGATAAAGGTGGTATGGAT
genomic: GAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
EST: gi|32945542|gb|CF050361.1|CF050361
EST:     TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAG                         ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
genomic: TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
EST: gi|18659405|gb|BM500320.1|BM500320
EST:     TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAG                         ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
genomic: TATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGAT
EST: gi|14203242|gb|BG836919.1|BG836919
EST:     ATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCCAG                         ATYTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGA
genomic: ATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTA-CCAGgtgatctatc ... attttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaagttcatgtcttagcaccatttgaattttagaaaccaacttattttgacagATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG
                                          cttatttt  CT-rich tract
                      atttgaattttagaaa  TA-rich tract