1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttgtcctatcctctgtgttaaacatcaaatttctctggtgatttggctcttatgcattgtttactgacccaatcttttctgttcatataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTGATCTTGAAAACGAGTTCAAGAAATTTGGCCGGCTTATTCCTGACGGTGT
species | Zea mays |
transcript | GRMZM2G167932_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAG AGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTGEST: gi|31354051|gb|CD438408.1|CD438408
genomic: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAGgttgtcctat ... atataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTG
EST: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAG AGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTGEST: gi|8367891|gb|BE050836.1|BE050836
genomic: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAGgttgtcctat ... atataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTG
EST: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAG AGAGCAAATCTGTGTATGTCGG-AACG-GCCATCATCTGTAAGTGAGGCTG
genomic: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAGgttgtcctat ... atataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTG
gatttggctcttatgcattgtttactgacccaatcttttctgttcatataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTGATCTTGAAAACGAGTTCAAGAAATTTGGCCGGCTTATTCCTGACGGTGT
tactgac putative branch site (score: 1)
tcttttctgttcat putative PPT
ttcatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtcctatcctctgtgttaaacatcaaatttctctggtgatttggctcttatgcattgtttactgacccaatcttttctgttcatataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTGATCTTGAAAACGAGTTCAAGAAATTTGGCCGGCTTATTCCTGACGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA