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gtaattatccttgacaagccaattgtcatgatcactttttctctatttctaaagcaacacactttaattttttattaacatttcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAGTTGCATCAGGTCACAAA
species | Zea mays |
transcript | GRMZM2G167886_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCT ---G-CCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAGEST: gi|87298785|gb|DY470788.1|DY470788
genomic: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatcc ... tcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
EST: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCT ---G-CCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAGEST: gi|78092063|gb|DV520437.1|DV520437
genomic: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatcc ... tcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
EST: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCT ATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAGEST: gi|22489334|gb|BU049257.1|BU049257
genomic: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatcc ... tcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
EST: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTC- -T--GCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
genomic: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatcc ... tcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
tttctctatttctaaagcaacacactttaattttttattaacatttcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAGTTGCATCAGGTCACAAA
tattaac putative branch site (score: 1)
catttcttcc CT-rich tract
aacacactttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattatccttgacaagccaattgtcatgatcactttttctctatttctaaagcaacacactttaattttttattaacatttcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAGTTGCATCAGGTCACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT