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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgtttgctatcaacaaacaaatgtcgaattcattttgtttatgatactgagaaggcacaaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTGTCAC

Basic information

species Zea mays
transcript GRMZM2G167356_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167356_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g12850.1 (Oryza sativa), 3'ss of exon 5
gttggtgtttgctatcaacaaacaaatgtcgaattcattttgtttatgat----actgagaaggcacaaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTGTCAC
||   | || |   |  | | | |||| |  ||    || |  |||  ||    ||||| |||  |  |||||| ||||||||||| ||| ||||| ||    ||||||||| |  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
gtacttattagacttacagataaaaatcttcaacgatttgtagttacaatgaaaactgacaagatattaaattttagATGAGTTGAGGGAGCACTTCTCCCCATATGGTAAGATTGTTGAACATCAAATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGATTTGGTTTTGTCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9255383|gb|BE345851.1|BE345851
EST:     TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG                         ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: gi|148932748|gb|EE285380.2|EE285380
EST:     TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG                         ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: gi|148946214|gb|EC891510.2|EC891510
EST:     TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG                         ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: gi|211074280|gb|FK950693.1|FK950693
EST:     TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTTCTGAAG                         ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacaaatgtcgaattcattttgtttatgatactgagaaggcacaaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTGTCAC
             aattcattttgtttat  TA-rich tract