1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtaccctctgagcaaacatttcagcaacttctttctgatttgggattcactgacagtttcttgattaccaatcttagCACATATCATCGTTGAGAGATTTGAAGTTTGGGGGATCTGAATCAATGAGATCAATGAGACAGGACTTATTCCCCGAGCTTGAAGATGACCAGGATATGG
species | Zea mays |
transcript | GRMZM2G165945_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGTAAGAGCAACGGTGGTGGGAAGAGAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGEST: gi|78087675|gb|DV516068.1|DV516068
genomic: AGGTAAGAGCAACGGTGGTGGGAAGAGAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG
EST: GATGGGATAGGTAAGAGCAACGGTGGTGGGAAGAGAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGEST: gi|211129018|gb|FL016633.1|FL016633
genomic: GATGGGATAGGTAAGAGCAACGGTGGTGGGAAGAGAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG
EST: AGGTAAGAGCAACGGTGGTGGGAAGAGAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG
genomic: AGGTAAGAGCAACGGTGGTGGGAAGAGAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG
agcaacttctttctgatttgggattcactgacagtttcttgattaccaatcttagCACATATCATCGTTGAGAGATTTGAAGTTTGGGGGATCTGAATCAATGAGATCAATGAGACAGGACTTATTCCCCGAGCTTGAAGATGACCAGGATATGG
ttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaccctctgagcaaacatttcagcaacttctttctgatttgggattcactgacagtttcttgattaccaatcttagCACATATCATCGTTGAGAGATTTGAAGTTTGGGGGATCTGAATCAATGAGATCAATGAGACAGGACTTATTCCCCGAGCTTGAAGATGACCAGGATATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG