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gtaattgtgtgccacgttaccgggttctaagttttcttatgctgcatatatgttaaccttgtttttctatctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCAGCAGCTGCCGCAGCTACTGGAGCATCTGGATTTGAATTTGGTGTGGAC
species | Zea mays |
transcript | GRMZM2G165926_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|84977035|gb|DW475457.1|DW475457
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|32838026|gb|CD977704.1|CD977704
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|211459834|gb|FK984334.1|FK984334
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|34391254|gb|CF384482.1|CF384482
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|261490449|gb|GO359940.1|GO359940
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: TTGTTCATATCCCTCCTNGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGTTGCTTCCGCEST: gi|67025094|gb|CO453843.1|CO453843
genomic: TTGTTCATATCCCTCCT-GGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|148954523|gb|EC899958.2|EC899958
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|28987468|gb|CB351650.1|CB351650
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGEST: gi|71419001|gb|DR804614.1|DR804614
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAG
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|40334578|gb|CK368648.1|CK368648
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAAGCGGTTTTGCTGCTTCCGEST: gi|32806343|gb|CD958577.1|CD958577
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAA-GCGGTTTTGCTGCTTCCG
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCEST: gi|38502551|gb|CF972411.1|CF972411
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
tctaagttttcttatgctgcatatatgttaaccttgtttttctatctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCAGCAGCTGCCGCAGCTACTGGAGCATCTGGATTTGAATTTGGTGTGGAC
tgttaac putative branch site (score: 336)
ccttgtttttctatct CT-rich tract
tttttctatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgtgtgccacgttaccgggttctaagttttcttatgctgcatatatgttaaccttgtttttctatctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGCAGCAGCTGCCGCAGCTACTGGAGCATCTGGATTTGAATTTGGTGTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA