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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttttttagttttaacatagtcttcgccacggtcttcctctcagagtaatatagttgagaaagaaaactgaaaacttatttcttttgcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCGTGGAGCCAAGACCCTTGATCTTATCAGGAGCAGCTTCCCCTCTGGGAAG

Basic information

species Zea mays
transcript GRMZM2G165747_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211325033|gb|FL127492.1|FL127492
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211331525|gb|FL127534.1|FL127534
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211325031|gb|FL127490.1|FL127490
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGNGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211327192|gb|FL127501.1|FL127501
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211331526|gb|FL127535.1|FL127535
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211335857|gb|FL127560.1|FL127560
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211325028|gb|FL127487.1|FL127487
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211327185|gb|FL127494.1|FL127494
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211325029|gb|FL127488.1|FL127488
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211325025|gb|FL127484.1|FL127484
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211333686|gb|FL127544.1|FL127544
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGNTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211331521|gb|FL127530.1|FL127530
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211331520|gb|FL127529.1|FL127529
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211333687|gb|FL127545.1|FL127545
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211327195|gb|FL127504.1|FL127504
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211325026|gb|FL127485.1|FL127485
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211329365|gb|FL127518.1|FL127518
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211331515|gb|FL127524.1|FL127524
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211333685|gb|FL127543.1|FL127543
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211329369|gb|FL127522.1|FL127522
EST:     AATGTGCTTATTGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211329363|gb|FL127516.1|FL127516
EST:     AATGNGCTTATTGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCA
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCA
EST: gi|211333688|gb|FL127546.1|FL127546
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211331528|gb|FL127537.1|FL127537
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         NACCCTCNCGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211335858|gb|FL127561.1|FL127561
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211327189|gb|FL127498.1|FL127498
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211333684|gb|FL127542.1|FL127542
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211333681|gb|FL127539.1|FL127539
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211335851|gb|FL127554.1|FL127554
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211331523|gb|FL127532.1|FL127532
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211335856|gb|FL127559.1|FL127559
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
EST: gi|211331516|gb|FL127525.1|FL127525
EST:     AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAA                         GACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG
genomic: AATGTGCTTATCGAGACATACTTTGCTGACATTCCTGCTGAGTCCTACAAgtatgttttt ... gcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagagtaatatagttgagaaagaaaactgaaaacttatttcttttgcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCGTGGAGCCAAGACCCTTGATCTTATCAGGAGCAGCTTCCCCTCTGGGAAG
                                 cttatttcttttgc  CT-rich tract
                             aaaacttatttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtttttttttagttttaacatagtcttcgccacggtcttcctctcagagtaatatagttgagaaagaaaactgaaaacttatttcttttgcaaacgcagGACCCTCACGTCATTGAGTGGTGTGACTGCTTACGGTTTTGATCTTATCCGTGGAGCCAAGACCCTTGATCTTATCAGGAGCAGCTTCCCCTCTGGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT