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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatgtggcaccactgcattgcatttttaattgtttcttctatcaattgcagtctgtttttttttgctttgcttactcattgctttaattactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCCCAAAGTGCAGGAAGTAGTACCACTGCTATTGCAAGTACCAGTAGTTCTA

Basic information

species Zea mays
transcript GRMZM2G165418_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165418_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g36770.1 (Oryza sativa), 3'ss of exon 4
tatatgtggcaccactgcattgcatttttaattgtttcttctat-caattgcagt-ctgtttttttttgctttgcttactcattgctttaattactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCCCAAAGTGCAGGAAGTAGTACCACTGCTATTGCAAGTACCAGTAGTTCTA---
     |     ||  | | || | |||||  |       | |   ||||   |||  |   | ||||  | ||| ||||  ||||||||| || || ||||||| ||||||||||||||||||| | || |||| |||||||||||   ||| |  |||| ||| | | ||||| || ||| ||||||||| ||||||||||   
--cgagctatgccttttcttttcttttttcctcacaaaatatccacaatccaagtattagctgttttgaccttggttacatattgctttacttcctttacagGTGCAAGAGAAGAAAGTAAAACAAGTTTCAGTTATGAATTTGGA---TTCACGGAGTGTAGGGACTGGTACCTCTTCTAGTGCAAGTACTAGTAGTTCTAGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352864|gb|CD437221.1|CD437221
EST:     ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAG                         GTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
genomic: ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAGgtatggatgc ... tactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
EST: gi|19822589|gb|BQ048613.1|BQ048613
EST:     ATGCTCTCTCCCTTTTGNCTACAAATGATAAAACAATAAAATACTGGAAG                         GTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
genomic: ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAGgtatggatgc ... tactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
EST: gi|67025874|gb|CO454623.1|CO454623
EST:     ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAG                         GTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
genomic: ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAGgtatggatgc ... tactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgcagtctgtttttttttgctttgcttactcattgctttaattactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCCCAAAGTGCAGGAAGTAGTACCACTGCTATTGCAAGTACCAGTAGTTCTA
            tttttttttgcttt  TA-rich tract