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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgattgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG

Basic information

species Zea mays
transcript GRMZM2G165357_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
------------------------gtatgctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtg-attgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG
                         | || ||  || |   ||    |       | | | |||||    | | ||||||||    |   || ||  ||    |||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||
gtacagtctctattatatatataactctgttaagtc-caactattcaaatacaaatct-tgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA11G15020.1 (Glycine max), 3'ss of exon 5
-------------gtatgctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattg------gtgtttgtgat-tgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG
              | ||  |  | | | || | ||| || |  | | |||     | |  |   || | |        |||| |  |  |   | | |||||| || ||||||||||| ||||| || ||||||||||| || ||||||||  ||||||| || ||
atattaattctacttctgtcatgtgt-tattgcttgaaagttc-tgtttttcagctgatccttgagacactatctaatatgttaggaaaataatttttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA13G40960.1 (Glycine max), 3'ss of exon 6
gtatgctagatctctgtta--catgagaggtggtatattttcatagttt-----ttcctga-----tattggt---gtttgtgattgtctg------taacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG
   ||        |||| |  ||| |  | | | |  || ||   | ||     | | |||     |||   |    ||||| || |  |       | |||||| || ||||||||||| ||||| || ||||||||||| || ||||||||| |||| ||||| ||
---tgtctacctcctgtcatgcatcattgatcgaaagttctctctgcttatctgtccttgaaagactatatatctaatttgtaatggagtaattactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTAGGAGCAAG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA12G06990.1 (Glycine max), 3'ss of exon 5
---gtatgctagatctctgttacatgagaggt------ggtatattttcatagtttttcct---gatattg------gtgtttgtgattgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG
    | |  |  |  ||||| |  ||  |  |       ||    |||   || || ||||   || | |        |||| |  | |   | | |||||| || ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||||| || ||
tatatttattctacttctgtcatgtgtcatatcttgaaagttctgtttttcagcttatccttgagacactatctaatatgttgggaaataatttttacagACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 5
gtatgctagatctctgttacatgagaggtggtatattttc--------atagttt-----ttcctgatattggtgtttgtgatt------gtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG
 | | |||  |   |  |   | |    |  ||| ||||         ||  |||     ||  ||||  |  |  |||| | |       |   |||||||| || ||||||||||| ||||| ||| |||||||| | || ||||| |||||||||||||| ||
-tcttctaatttcttaatgagtaatcaattatatgtttttccctgagtatgctttggacattaatgatggttttccttgtaaatcatgcaatacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGAGAGTTGGAGCCAG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 3'ss of exon 5
-------------gtatgctagatc-tctgttacatgagaggtggtatat-tttca----tagtttttcctgatattggtgtttgtgattgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG
             | || || || | | |||    |||   |   | |   |||||     || ||    ||| ||| | |||||  | |   | |  |||||||||||||||||||| |||||||| || |||||||| ||||| || ||  ||||||| || ||
tatatatatataagaatccttgagcgtttgtagagtgaagagatatgtgcgtttcagtttcagattggtttgaaatttg-gtttgaaacttcattttgcagACCATCAAGACAAATGTGATTGGTACGCTCAACATGCTTGGACTCGCTAAACGAGTTGGTGCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148939205|gb|EC883670.2|EC883670
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|32829264|gb|CD968942.1|CD968942
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGT
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGT
EST: gi|211377009|gb|FL406724.1|FL406724
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         AC-ATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|149065532|gb|EE286652.2|EE286652
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211139565|gb|FL400395.1|FL400395
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211364308|gb|FL429333.1|FL429333
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTTGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211225658|gb|FL394160.1|FL394160
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTTGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211102135|gb|FL378499.1|FL378499
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|32829447|gb|CD969125.1|CD969125
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGT
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGT
EST: gi|211513418|gb|FL378838.1|FL378838
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211182716|gb|FL410032.1|FL410032
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTTGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|32914071|gb|CF018883.1|CF018883
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211479897|gb|FL423797.1|FL423797
EST:     CCTTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCCATCA-GACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAA
genomic: CCTT-GCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACC-ATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAA
EST: gi|211264125|gb|FL402706.1|FL402706
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTTGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211355257|gb|FL372995.1|FL372995
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTTGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211057982|gb|FL426572.1|FL426572
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|60394382|gb|DN227252.1|DN227252
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|71444250|gb|DR825300.1|DR825300
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCGAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|149082965|gb|EE172201.2|EE172201
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|71449953|gb|DR831003.1|DR831003
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211143536|gb|FL424879.1|FL424879
EST:     CTTGCTTNGCC-TGCTTCACCAATCTTCTANCA-GCACAACCCTGTTAAG                         ACCATCAAGACAA-TGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: CTTGCTT-GCCCTGCTTCACCAATCTTCTA-CAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211479918|gb|FL425086.1|FL425086
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211084498|gb|FL378036.1|FL378036
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|149070980|gb|EE159385.2|EE159385
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|60339871|gb|DN206844.1|DN206844
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211441206|gb|FL381374.1|FL381374
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211021925|gb|FL369377.1|FL369377
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211108221|gb|FL373168.1|FL373168
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|149070503|gb|EE158907.2|EE158907
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|15100352|gb|BI396143.1|BI396143
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTTGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211535769|gb|FL372741.1|FL372741
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 255

ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 451

ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 571

ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 872

ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtatattttcatagtttttcctgatattggtgtttgtgattgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG
                     tcctgat  putative branch site (score: 872)
     atattttcatagtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgattgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT