1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcggcggtactgcgttttcgctgttccgactgtgtcttgttccggaaattttgaaagatttcttagtaactaatgtttttgtcgtccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCGATGAAAAAGTTTCCGAGTGCGTGAAAGAAGTGGTCTGCTGCAGTTCTG
species | Zea mays |
transcript | GRMZM2G165044_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|74234292|gb|DT642206.1|DT642206
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|148928371|gb|EE285057.2|EE285057
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|149037193|gb|EE155279.2|EE155279
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|148963606|gb|EE014646.2|EE014646
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|148938218|gb|EC882505.2|EC882505
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|148943118|gb|EC888176.2|EC888176
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|71766106|gb|DR964043.1|DR964043
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|148999876|gb|EE036910.2|EE036910
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|71420925|gb|DR805237.1|DR805237
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|94477093|gb|EB706051.1|EB706051
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|71760265|gb|DR958202.1|DR958202
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|86466629|gb|DY232999.1|DY232999
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|149042041|gb|EE047016.2|EE047016
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|148949435|gb|EC894894.2|EC894894
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|71774351|gb|DR972229.1|DR972229
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|78110998|gb|DV529395.1|DV529395
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|94477752|gb|EB706710.1|EB706710
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: GGACATGAGACTGGACATGGACAACATGAGCTGCGAG GACCTGTGGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|74232028|gb|DT639942.1|DT639942
genomic: GGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|76921859|gb|DV168737.1|DV168737
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|148961832|gb|EE012614.2|EE012614
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|71436822|gb|DR817872.1|DR817872
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|88755341|gb|DY539482.1|DY539482
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|76925038|gb|DV170262.1|DV170262
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|94476101|gb|EB705059.1|EB705059
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|149014262|gb|EE043830.2|EE043830
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|148934246|gb|EC878267.2|EC878267
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|71758169|gb|DR956106.1|DR956106
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|149082698|gb|EE171913.2|EE171913
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|76921857|gb|DV168736.1|DV168736
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|89248748|gb|DY620534.1|DY620534
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|50323081|gb|CO518207.1|CO518207
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|88755287|gb|DY539428.1|DY539428
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|110533295|gb|EE037475.1|EE037475
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|33467803|gb|CF244852.1|CF244852
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|50330081|gb|CO525207.1|CO525207
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|149102323|gb|EE287689.2|EE287689
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|71434518|gb|DR815568.1|DR815568
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|86472396|gb|DY238766.1|DY238766
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCEST: gi|71766107|gb|DR964044.1|DR964044
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
tccggaaattttgaaagatttcttagtaactaatgtttttgtcgtccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCGATGAAAAAGTTTCCGAGTGCGTGAAAGAAGTGGTCTGCTGCAGTTCTG
tccgtcc CT-rich tract
aaattttgaaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcggcggtactgcgttttcgctgttccgactgtgtcttgttccggaaattttgaaagatttcttagtaactaatgtttttgtcgtccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCCGATGAAAAAGTTTCCGAGTGCGTGAAAGAAGTGGTCTGCTGCAGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG