1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggacgatggccatctattgtgttacattgtgaattgggtgttcctgaaggtgttcatcaagtttctcattttgtattaccgtttacctctttgatggcagATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTCTGCATGAGGGACCAAAATTGTCCGATGATAATCCGGCTGTAATAATTCC
species | Zea mays |
transcript | GRMZM2G163888_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAA ATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTCEST: gi|22545661|gb|BU098020.1|BU098020
genomic: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAAgtaagtcaaa ... ttgatggcagATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTC
EST: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAA ATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTCEST: gi|213191563|gb|FM181919.1|FM181919
genomic: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAAgtaagtcaaa ... ttgatggcagATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTC
EST: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAA ATCTGAATGGAGACGTGTCTACAGCGAGAACACAATTTGATCATTTGACTCEST: gi|60354831|gb|DN221804.1|DN221804
genomic: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAAgtaagtcaaa ... ttgatggcagATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTC
EST: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAA ATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTCEST: gi|71444781|gb|DR825831.1|DR825831
genomic: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAAgtaagtcaaa ... ttgatggcagATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTC
EST: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAA ATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTC
genomic: GAAAACAAATGACTTTCAGCTCAATGGCCTTCCATTTGAGCACAACCAAAgtaagtcaaa ... ttgatggcagATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTC
gaaggtgttcatcaagtttctcattttgtattaccgtttacctctttgatggcagATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTCTGCATGAGGGACCAAAATTGTCCGATGATAATCCGGCTGTAATAATTCC
ctttgat putative branch site (score: 145)
ccgtttacctcttt CT-rich tract
attttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacgatggccatctattgtgttacattgtgaattgggtgttcctgaaggtgttcatcaagtttctcattttgtattaccgtttacctctttgatggcagATCTGAATGGAGACGTGTCTACAGCGACAACACAATTTGATCATTTGACTCTGCATGAGGGACCAAAATTGTCCGATGATAATCCGGCTGTAATAATTCC
- - - - - - - - ttgtgtt
- - - - - - - - - - - - - - -tgaattg
- - - - - - - - - - - - - - - - - - - -gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - -gttcatc