1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatttcatctatcttttaaggttattaagcaagcatattgatctgagtgacatcattctagtttgatattccattatgaagttacctttgcaactacaaccttacttttgagctctaccgttgttgatgagactgactcagtcactcagtattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACTGATTTGCATAACCATCCGTTGGTTACAGATGGGAAAGTGTTTTTACAG
species | Zea mays |
transcript | GRMZM2G163713_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATG GTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACTEST: gi|78075306|gb|DV503740.1|DV503740
genomic: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATGgtatttcatc ... tattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACT
EST: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATG GTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACTEST: gi|149085197|gb|EE174704.2|EE174704
genomic: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATGgtatttcatc ... tattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACT
EST: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATG GTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACTEST: gi|149069618|gb|EE158000.2|EE158000
genomic: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATGgtatttcatc ... tattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACT
EST: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATG GTTGACAAAGATGAAATGGTTCCCGATATGTTGGTACTCCCACCEST: gi|148940057|gb|EC884801.2|EC884801
genomic: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATGgtatttcatc ... tattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACC
EST: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATG GTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACTEST: gi|78118872|gb|DV537256.1|DV537256
genomic: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATGgtatttcatc ... tattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACT
EST: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATG GTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGAAACTEST: gi|91048771|gb|EB159189.1|EB159189
genomic: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATGgtatttcatc ... tattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACT
EST: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATG GTTGACCAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACT
genomic: TCAAGGTCACTACAGAGTCTGTCATTGAAGAATTGAACAAAATGCACATGgtatttcatc ... tattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACT
cttttgagctctaccgttgttgatgagactgactcagtcactcagtattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACTGATTTGCATAACCATCCGTTGGTTACAGATGGGAAAGTGTTTTTACAG
gactgac putative branch site (score: 28)
tattgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcatctatcttttaaggttattaagcaagcatattgatctgagtgacatcattctagtttgatattccattatgaagttacctttgcaactacaaccttacttttgagctctaccgttgttgatgagactgactcagtcactcagtattgaatagGTTGACAAAGATGAAATGGTTCCAGATATGTTGGTACTCCCACCTGGAACTGATTTGCATAACCATCCGTTGGTTACAGATGGGAAAGTGTTTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG