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gttagttcagctatgaccctcaccaaagctggcttcaacctacctatttcgaaagtatgacgtgtttttgtattactatgtctgtagAACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGCACCTGTGTATACTCGGGAAGATTTGAAGCGTATGAAAGAAATATCAAGG
species | Zea mays |
transcript | GRMZM2G162445_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACAAGGCTCTACCAGGGAAAAGCAAGGGAAGTGTTAGTGGTGTGTTCAG AACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGCEST: gi|211498653|gb|FL137518.1|FL137518
genomic: TACAAGGCTCTACCAGGGAAAAGCAAGGGAAGTGTTAGTGGTGTGTTCAGgttagttcag ... atgtctgtagAACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGC
EST: TACAAGGCTCTACCAGGGAAAAGCAAGGGAAGTGTTAGTGGTGTGTTCAG AACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAEST: gi|26457415|gb|CA828998.1|CA828998
genomic: TACAAGGCTCTACCAGGGAAAAGCAAGGGAAGTGTTAGTGGTGTGTTCAGgttagttcag ... atgtctgtagAACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAA
EST: TACAAGGCTCTACCAGGGAAAAGCAAGGGAAGTGTTAGTGGTGTGTTCAG AACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGCEST: gi|211495776|gb|FL137514.1|FL137514
genomic: TACAAGGCTCTACCAGGGAAAAGCAAGGGAAGTGTTAGTGGTGTGTTCAGgttagttcag ... atgtctgtagAACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGC
EST: TACAAGGCTCTACCAGGGAAAAGCAAGGGAAGTGTTAGTGGTGTGTTCAN AACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGCEST: gi|22543326|gb|BU093764.1|BU093764
genomic: TACAAGGCTCTACCAGGGAAAAGCAAGGGAAGTGTTAGTGGTGTGTTCAGgttagttcag ... atgtctgtagAACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGC
EST: TAGTGG-GTGTTCAG AACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGC
genomic: TAGTGGTGTGTTCAGgttagttcag ... atgtctgtagAACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGC
cttcaacctacctatttcgaaagtatgacgtgtttttgtattactatgtctgtagAACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGCACCTGTGTATACTCGGGAAGATTTGAAGCGTATGAAAGAAATATCAAGG
tttttgtattactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttcagctatgaccctcaccaaagctggcttcaacctacctatttcgaaagtatgacgtgtttttgtattactatgtctgtagAACTGTCCTTATTGCAAATAATGTGTCGCTTCTTAACAAAGAGGCAAATGCACCTGTGTATACTCGGGAAGATTTGAAGCGTATGAAAGAAATATCAAGG
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