1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcgacaaattactttgttatgtggtcctgtcgtcctgagctttggttctttgttttaagtgtctggcttcgtaacatcatttttatatatactactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG
species | Zea mays |
transcript | GRMZM2G162409_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGG GAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
genomic: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgc ... actactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
ttctttgttttaagtgtctggcttcgtaacatcatttttatatatactactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG
tcgtaac putative branch site (score: 49)
taacatcatttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgacaaattactttgttatgtggtcctgtcgtcctgagctttggttctttgttttaagtgtctggcttcgtaacatcatttttatatatactactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG
-cgacaaa
- - - - - - - - - - - ggtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatca