1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatttgcctgtcatgatcaggaatatgaaattcagttgtaatataaacatttttgctccaatattctttgtatgatagtctaatggtttctcatatgcagAGACTCTGGTACATTCAACATTGGATCACTGCGACAATGCTGATTTTACCCTAGAAGTTTTCTTTAATATGAAAAATCACACAGTGTATGTGAGAAAAAG
species | Zea mays |
transcript | GRMZM2G162347_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAACACCAGTGNNNNNNNNGCATGTGACTCTTGTGCTTGATTTGGACG AGACTCTGGTACATTCAACATTGGATCACTGCGACAATGCTGATTTTACCCEST: gi|71533678|gb|DR784437.1|DR784437
genomic: GAAAACACCAGTGAAAAAAAAGCATGTGACTCTTGTGCTTGATTTGGACGgtgagcagca ... tcatatgcagAGACTCTGGTACATTCAACATTGGATCACTGCGACAATGCTGATTTTACCC
EST: GACTCTTGTGCTTGATTTGGACG AGACTCTGGTACATTCAACATTGGATCACTGCGACAATGCTGATTTTACCCEST: gi|116825971|gb|EC869721.1|EC869721
genomic: GACTCTTGTGCTTGATTTGGACGgtgagcagca ... tcatatgcagAGACTCTGGTACATTCAACATTGGATCACTGCGACAATGCTGATTTTACCC
EST: AAAGCATGTGACTCTTGTGCTTGATTAGGACG AGACTC-GGTACATTCAACATTGGATCAC-GCGACAATGCTGATTTTACCC
genomic: AAAGCATGTGACTCTTGTGCTTGATTTGGACGgtgagcagca ... tcatatgcagAGACTCTGGTACATTCAACATTGGATCACTGCGACAATGCTGATTTTACCC
aacatttttgctccaatattctttgtatgatagtctaatggtttctcatatgcagAGACTCTGGTACATTCAACATTGGATCACTGCGACAATGCTGATTTTACCCTAGAAGTTTTCTTTAATATGAAAAATCACACAGTGTATGTGAGAAAAAG
gtctaat putative branch site (score: 78)
tttctcat putative PPT
aatattctttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttgcctgtcatgatcaggaatatgaaattcagttgtaatataaacatttttgctccaatattctttgtatgatagtctaatggtttctcatatgcagAGACTCTGGTACATTCAACATTGGATCACTGCGACAATGCTGATTTTACCCTAGAAGTTTTCTTTAATATGAAAAATCACACAGTGTATGTGAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - tgcctgt
- - - - - -catgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtatg