1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaattttctgcctaacaaatatattcagctttgctaatgctttactattgaaaaatatgaaacaatatgagcctctctgcatcggtttatccctttgccagactccactcctgggagagactctggcattggatttgtccttttttatgttaatttctcgttatgtcctacaacttgacatctgtgttttttagCCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAG
species | Zea mays |
transcript | GRMZM2G161553_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTTACTCTCATTTTCACAAATATACTGGAACATCAACCTGATTGCCCG CCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGEST: gi|211409079|gb|FL206579.1|FL206579
genomic: GCTTTACTCTCATTTTCACAAATATACTGGAACATCAACCTGATTGCCCGgtaattttct ... tgttttttagCCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAG
EST: GCTTTACTCTCATTTTCACAAATATACTGGAACATCAACCTGATTGCCCG CCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGEST: gi|211280280|gb|FL480361.1|FL480361
genomic: GCTTTACTCTCATTTTCACAAATATACTGGAACATCAACCTGATTGCCCGgtaattttct ... tgttttttagCCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAG
EST: GCTTTACTCTCATTTTCACAAATATACTGGAACATCAACCTGATTGCCCG CCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAG
genomic: GCTTTACTCTCATTTTCACAAATATACTGGAACATCAACCTGATTGCCCGgtaattttct ... tgttttttagCCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAG
cttttttatgttaatttctcgttatgtcctacaacttgacatctgtgttttttagCCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAG
tgtttttt CT-rich tract
ttatgttaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttctgcctaacaaatatattcagctttgctaatgctttactattgaaaaatatgaaacaatatgagcctctctgcatcggtttatccctttgccagactccactcctgggagagactctggcattggatttgtccttttttatgttaatttctcgttatgtcctacaacttgacatctgtgttttttagCCTGAGGTTGTTGAGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG