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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatatggcttgatatcattttatttaagttggatctagtttacggagaggcttctgcattataacacttgtctgtatttccagTATGCCCGCATTATTCAGAAACTTGGTTTTCCAGCTAAGTTTAAG

Basic information

species Zea mays
transcript GRMZM2G161418_T05
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161418_T05 (Zea mays), 3'ss of exon 5
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------------------------------------------------------------------gtgtgatatggcttgatatcattttatttaagttggatctagtt--tacggagaggcttctgcattataacac-------ttgtctgtatttccagTATGCCCGCATTATTCAGAAACTTGGTTTTCCAGCTAAGTTTAAG
                                                                                            ||  || ||  |  |    | ||  ||||||  |||   ||   ||    | |  | |  | | | |||        || | | | |||||||||||| || ||||||||||| || |||||||||||||| ||||||
gtatttgatgcattcagtgtgtttagttatcttaaaagttgtaggtgtaattttatctatcaaatttaaaacaagttgtaagtgtaatttactggaatagcaaggcaatgatgtaaataagttccatcatcttatcacaacaatgtatttctaatcttacatgttttttttttgtttttttccagTATGCTCGAATTATTCAGAAGCTCGGTTTTCCAGCTAAATTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggatctagtttacggagaggcttctgcattataacacttgtctgtatttccagTATGCCCGCATTATTCAGAAACTTGGTTTTCCAGCTAAGTTTAAG
                              ttataac  putative branch site (score: 2)
                                              tatttcc  putative PPT
                             attataaca  TA-rich tract