1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattacatgcagacccaagtagaactcagttatgctgtactctgtgacttcgcatgcatgttccttggtgcctaattttttttccctttttacattacagTCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
species | Zea mays |
transcript | GRMZM2G160927_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAA TCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAGEST: gi|211510092|gb|FL332408.1|FL332408
genomic: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAAgtaagcttgt ... tacattacagTCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
EST: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAA TCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAGEST: gi|71439002|gb|DR820052.1|DR820052
genomic: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAAgtaagcttgt ... tacattacagTCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
EST: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAA TCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAGEST: gi|211488642|gb|FL313368.1|FL313368
genomic: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAAgtaagcttgt ... tacattacagTCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
EST: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAA TCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAGEST: gi|33942624|gb|CF349224.1|CF349224
genomic: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAAgtaagcttgt ... tacattacagTCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
EST: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAA TCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
genomic: TTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAAgtaagcttgt ... tacattacagTCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
gacttcgcatgcatgttccttggtgcctaattttttttccctttttacattacagTCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
gcctaat putative branch site (score: 175)
tgcctaattttttttc CT-rich tract
taatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattacatgcagacccaagtagaactcagttatgctgtactctgtgacttcgcatgcatgttccttggtgcctaattttttttccctttttacattacagTCAGAAGCTGCAAAGAAACTTCCTTTCATATTGGTTATAAATTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -tacatgc
- - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt