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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcattttttgttgttgtaaacgatgcatgctatatttgatatggaattcttgctctgcaatgttaacctgttgccaagtaaatttaccaatacgatagtgtaataactttttattgattcatgtgatcatgcattgatgaatcacttacatttgccctacttcttgcagCCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAG

Basic information

species Zea mays
transcript GRMZM2G160842_T03
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78106504|gb|DV524922.1|DV524922
EST:     ACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAG                         CCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAG
genomic: ACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAGgtaacttcat ... cttcttgcagCCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcatgtgatcatgcattgatgaatcacttacatttgccctacttcttgcagCCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAG
                            cacttac  putative branch site (score: 2)
                                    tttgccctacttctt  CT-rich tract
                               ttacattt  TA-rich tract