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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaagctcttgcattttctttcatcgtggaagtgtgttacagtgttaccagagatgagatcatatccgttattactttcgtcgtgccttccagTTCACCTTGCTGGGTACGGATTCGTACCACAAGCTGTGCTACAAGGAGCTGCATCATCCAAAGTGCGACGTCTGCCTTCAGTTTGTAAGGCCTCGTGTCC

Basic information

species Zea mays
transcript GRMZM2G160198_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160198_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g16090.2 (Oryza sativa), 3'ss of exon 4
gtaactaagctcttgcattttctttcatcgtggaagtgtgttacagtgtt-accagagatgagatcatatccgttattactttcgtcgtgccttccagTTCACCTTGCTGGGTACGGATTCGTACCACAAGCTGTGCTACAAGGAGCTGCATCATCCAAAGTGCGACGTCTGCCTTCAGTTTGTAAGGCCTCGTGTCC
|||||     |  |||| ||   || |   ||   |   ||    ||||| |   |   | ||    |  | |||  ||||||  || ||  | ||||||||||||||| ||||| ||| | |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||                
gtaacc---tttctgcaattcagtttagaatgtctgaaggtgtgtgtgttcaggtgttctcaggaagtgacagtt--tactttattc-tgtttcccagTTCACCTTGCTAGGTACAGATCCATACCACAAGCTGTGCTACAAGGAGCTTCATCACCCAAAGTGTGACGTCTGCCTTCAATTT----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148971754|gb|EE022487.2|EE022487
EST:     CTCAGTGCTTCCGCTGCAGGTCCTGCGGTCACCTTATCCGTGAGACCGAG                         TTCACCTTGCTGGGTACGGATTCGTACCACAAGCTGTGCTACAAGGAGCTG
genomic: CTCAGTGCTTCCGCTGCAGGTCCTGCGGTCACCTTATCCGTGAGACCGAGgtaactaagc ... tgccttccagTTCACCTTGCTGGGTACGGATTCGTACCACAAGCTGTGCTACAAGGAGCTG
EST: gi|149102618|gb|EE287975.2|EE287975
EST:     CTCAGTGCTTCCGCTGCAGGTCCTGCGGTCACCTTATCCGTGAGACCGAG                         TTCACCTTGCTGGGTACGGATTCGTACCACAAGCTGTGCTACAAGGAGCTG
genomic: CTCAGTGCTTCCGCTGCAGGTCCTGCGGTCACCTTATCCGTGAGACCGAGgtaactaagc ... tgccttccagTTCACCTTGCTGGGTACGGATTCGTACCACAAGCTGTGCTACAAGGAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtgttaccagagatgagatcatatccgttattactttcgtcgtgccttccagTTCACCTTGCTGGGTACGGATTCGTACCACAAGCTGTGCTACAAGGAGCTGCATCATCCAAAGTGCGACGTCTGCCTTCAGTTTGTAAGGCCTCGTGTCC
                                             tgccttcc  CT-rich tract
                              ttattacttt  TA-rich tract