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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcacttgcatgtatattactgaagaatatagtaactggatgacttttagtttataaatgcagatgcatgtttcttaactcacttggtttttatctcagGAACTATACGTAGACAAAGCAGCATGACGGATGTCAAATTAAG

Basic information

species Zea mays
transcript GRMZM2G159307_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159307_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g12660.1 (Oryza sativa), 3'ss of exon 5
attcacttgcatgtatattactgaagaatatagta-actggatgacttttagttt-ataaatgcagatgcatgtttcttaactcacttggtttttatctcagGAACTATACGTAGACAAAGCAGCATGACGGATGTCAAATTAAG
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aatgaccatagagaata--actgaattatgtatttcattctacctcaggaagttttgcagctgtatatttgttatcttagtttggtttattttttatcacagGAACTATTCGTAGACAAAGCAGCATGACGGACATGAAATTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagtttataaatgcagatgcatgtttcttaactcacttggtttttatctcagGAACTATACGTAGACAAAGCAGCATGACGGATGTCAAATTAAG
                                aactcac  putative branch site (score: 2)
 tttttatctc  putative PPT
 tttataaat  TA-rich tract