1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcaagtcgaacaatttattgactgtgtttactttattgtctggttaattctcttttccaatgcatgccttttctatcatgattcactgctacatttttagGTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTACATGGGAGATAAAGGGACAGCCTGATTGTTCTAGCAAGCAG
species | Zea mays |
transcript | GRMZM2G159142_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTTGCGTGAGAATGTATTAATTGCGAATGGAAGTGACATTCGTCCATG GTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTACEST: gi|7844220|gb|AW787442.1|AW787442
genomic: GCTTTGCGTGAGAATGTATTAATTGCGAATGGAAGTGACATTCGTCCATGgtaagggatc ... acatttttagGTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTAC
EST: GCTTTGCGTGAGAATGTATTAATTGCGAATGGAAGTGACATTCGTCCATG GTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTACEST: gi|211288673|gb|FL312624.1|FL312624
genomic: GCTTTGCGTGAGAATGTATTAATTGCGAATGGAAGTGACATTCGTCCATGgtaagggatc ... acatttttagGTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTAC
EST: TGTATTAATTGCGAATGGAAGTGACATTCGTCCATG GTGGATATATCATCACTACCTAGCAATGCTGATGGCTCTTATTAGCCTTACEST: gi|7958449|gb|AW862751.1|AW862751
genomic: TGTATTAATTGCGAATGGAAGTGACATTCGTCCATGgtaagggatc ... acatttttagGTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTAC
EST: GCTTTGCGTGAGAATGGATTAATTGCGAATGGAAGTGACATTCGTCCATG GTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTAC
genomic: GCTTTGCGTGAGAATGTATTAATTGCGAATGGAAGTGACATTCGTCCATGgtaagggatc ... acatttttagGTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTAC
aattctcttttccaatgcatgccttttctatcatgattcactgctacatttttagGTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTACATGGGAGATAAAGGGACAGCCTGATTGTTCTAGCAAGCAG
ggttaat putative branch site (score: 126)
cattttt putative PPT
tacattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaagtcgaacaatttattgactgtgtttactttattgtctggttaattctcttttccaatgcatgccttttctatcatgattcactgctacatttttagGTGGATATATCATCACTATCTAGCAATGCTGATGGCTCTTATTAGCCTTACATGGGAGATAAAGGGACAGCCTGATTGTTCTAGCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -gaacaat
- - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - tgtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattca